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| Mutant Information |
|---|
| Mutant Name | FN-329 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-329 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21616904 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 19324315 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 22311795 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 23101114 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14189229 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 26470157 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 34425196 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8145419 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 8370950 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 19508472 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 573430 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 21138886 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 29195098 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10529822 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 3835949 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11900871 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 22146263 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr9 | 3117853 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 3117854 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 16674807 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9895244 | T-A | Homo | INTRON | |
| SBS | Chr10 | 9895245 | C-A | Homo | INTRON | |
| SBS | Chr10 | 16478176 | C-T | Homo | INTRON | |
| SBS | Chr10 | 16478177 | G-A | Homo | INTRON | |
| SBS | Chr10 | 21210425 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 64839 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 7076595 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 13883766 | A-C | Homo | INTERGENIC | |
| SBS | Chr12 | 1615624 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 10433076 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 12036002 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 18459319 | G-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 343310 | 343311 | 1 | |
| Deletion | Chr8 | 8442184 | 8442185 | 1 | |
| Deletion | Chr12 | 10490945 | 10490946 | 1 | |
| Deletion | Chr5 | 10928001 | 10937000 | 8999 | |
| Deletion | Chr9 | 11016357 | 11016358 | 1 | OsKitaake09g068800 |
| Deletion | Chr9 | 11954950 | 11955041 | 91 | |
| Deletion | Chr6 | 16534001 | 17350000 | 815999 | 48 |
| Deletion | Chr3 | 23920515 | 23920883 | 368 | |
| Deletion | Chr12 | 24747038 | 24747039 | 1 | |
| Deletion | Chr7 | 25406982 | 25407303 | 321 | |
| Deletion | Chr1 | 25535087 | 25535089 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 12355960 | 12355962 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 16792129 | 16808411 | |
| Inversion | Chr9 | 16792146 | 16808502 | |
| Inversion | Chr5 | 24321639 | 24408698 | OsKitaake05g197400 |
| Inversion | Chr5 | 24321777 | 24408776 | OsKitaake05g197400 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 15345331 | Chr1 | 21776462 | |
| Translocation | Chr10 | 15353013 | Chr1 | 21776460 | |
| Translocation | Chr9 | 18721495 | Chr6 | 16177616 | OsKitaake09g148500 |
| Translocation | Chr6 | 27609484 | Chr4 | 5071268 | |
| Translocation | Chr6 | 27609485 | Chr4 | 5071273 |