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| Mutant Information |
|---|
| Mutant Name | FN-33 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-33 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 29137977 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29137995 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 2793505 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 3443540 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 3443541 | G-T | Hetero | STOP_GAINED | OsKitaake03g048100 |
| SBS | Chr3 | 9818600 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 5709565 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 21412083 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 35616187 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 4950333 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 8940522 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14008707 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 1219017 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 6486197 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 16826258 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 19471456 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9436526 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 29008940 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2465856 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 7586406 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 9776802 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12803609 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17335006 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24688007 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6208511 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19527058 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21949318 | T-A | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3230001 | 3238000 | 7999 | |
| Deletion | Chr2 | 3798409 | 3798410 | 1 | OsKitaake02g055000 |
| Deletion | Chr7 | 5381508 | 5381513 | 5 | |
| Deletion | Chr6 | 16825886 | 16825890 | 4 | |
| Deletion | Chr12 | 18507903 | 18507905 | 2 | |
| Deletion | Chr6 | 20514317 | 20514319 | 2 | |
| Deletion | Chr5 | 20820424 | 20820437 | 13 | |
| Deletion | Chr11 | 21250550 | 21250551 | 1 | |
| Deletion | Chr6 | 24996336 | 24996385 | 49 | |
| Deletion | Chr1 | 28354147 | 28354154 | 7 | |
| Deletion | Chr3 | 37354847 | 37354857 | 10 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 13778278 | 13778280 | 1 | |
| Insertion | Chr7 | 10588958 | 10588960 | 1 | |
| Insertion | Chr11 | 12355960 | 12355962 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 6441564 | 6444731 | OsKitaake06g084300 |