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| Mutant Information |
|---|
| Mutant Name | FN-330 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-330 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20620314 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 42026392 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 18204685 | T-G | Homo | INTERGENIC | |
| SBS | Chr2 | 27022244 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 8131917 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 23188609 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 6981119 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 17172413 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 1816688 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6038326 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 17081660 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 18094866 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 22588775 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8676978 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 9820261 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 10474604 | G-C | Hetero | INTRON | |
| SBS | Chr6 | 24426650 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 2087400 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 4712963 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 18924593 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 9023869 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 25591935 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g202300 |
| SBS | Chr9 | 9963375 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 8195284 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8195285 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1344635 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4340448 | G-A | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1146082 | 1146083 | 1 | |
| Deletion | Chr5 | 1697620 | 1697622 | 2 | |
| Deletion | Chr6 | 7549896 | 7549947 | 51 | |
| Deletion | Chr4 | 9160400 | 9160402 | 2 | |
| Deletion | Chr7 | 9208005 | 9208132 | 127 | OsKitaake07g095400 |
| Deletion | Chr12 | 9974927 | 9974939 | 12 | |
| Deletion | Chr5 | 15597679 | 15597680 | 1 | |
| Deletion | Chr10 | 15762366 | 15762454 | 88 | |
| Deletion | Chr6 | 15900852 | 15900862 | 10 | |
| Deletion | Chr7 | 17225474 | 17225574 | 100 | |
| Deletion | Chr5 | 17229074 | 17229475 | 401 | |
| Deletion | Chr5 | 18755197 | 18755222 | 25 | |
| Deletion | Chr4 | 20742034 | 20742036 | 2 | |
| Deletion | Chr7 | 26278001 | 26610000 | 331999 | 46 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 17824538 | 17824542 | 3 | |
| Insertion | Chr4 | 11077459 | 11077461 | 1 | |
| Insertion | Chr8 | 20735493 | 20735496 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 1270443 | 1818580 | OsKitaake07g018400 |
| Inversion | Chr7 | 1270447 | 1818585 | OsKitaake07g018400 |
| Inversion | Chr7 | 26188716 | 26277790 | OsKitaake07g241700 |