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| Mutant Information |
|---|
| Mutant Name | FN-332 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-332 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26521781 | A-G | Homo | INTRON | |
| SBS | Chr1 | 34639610 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g363500 |
| SBS | Chr2 | 3087943 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13696872 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19117206 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 33049274 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 7281109 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9990901 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 16415326 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 18564814 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 20852351 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 22111923 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g241374 |
| SBS | Chr4 | 12767952 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 20780345 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 2986268 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g034700 |
| SBS | Chr5 | 3254586 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 13304868 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 881108 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 7856367 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9902357 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 15347347 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 3529623 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 21684857 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 2402701 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 5696004 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8187264 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 15258525 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9075773 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13402308 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14506809 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14829180 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19019368 | C-T | Hetero | INTRON |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 85068 | 85076 | 8 | |
| Deletion | Chr8 | 2844001 | 2866000 | 21999 | 2 |
| Deletion | Chr9 | 2889127 | 2889128 | 1 | |
| Deletion | Chr5 | 4266500 | 4266502 | 2 | |
| Deletion | Chr9 | 6702573 | 6702580 | 7 | |
| Deletion | Chr2 | 6722282 | 6722283 | 1 | |
| Deletion | Chr10 | 7858477 | 7858480 | 3 | |
| Deletion | Chr4 | 8217953 | 8218001 | 48 | OsKitaake04g042800 |
| Deletion | Chr9 | 12153966 | 12154100 | 134 | OsKitaake09g078700 |
| Deletion | Chr9 | 14406822 | 14406828 | 6 | |
| Deletion | Chr10 | 14874532 | 14874541 | 9 | |
| Deletion | Chr4 | 15864378 | 15864380 | 2 | OsKitaake04g077550 |
| Deletion | Chr8 | 16295694 | 16295696 | 2 | |
| Deletion | Chr7 | 17308532 | 17308533 | 1 | |
| Deletion | Chr3 | 27165447 | 27165452 | 5 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 12047338 | 12446756 | |
| Inversion | Chr12 | 12047339 | 12446752 | |
| Inversion | Chr8 | 22175213 | 23031785 | |
| Inversion | Chr8 | 22222921 | 23031787 |