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| Mutant Information |
|---|
| Mutant Name | FN-333 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-333 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11690405 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21170170 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 2819818 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 3372797 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g047700 |
| SBS | Chr3 | 29075584 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 4478357 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21549800 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 24227997 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 14187262 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 13189237 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 17465355 | C-G | Homo | INTERGENIC | |
| SBS | Chr6 | 21501600 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 21501603 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 23035500 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 16546238 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 21819135 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 23372166 | A-T | Homo | INTRON | |
| SBS | Chr7 | 29550644 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 14432459 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 2339389 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 7651633 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr10 | 12459287 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 18911528 | G-C | Homo | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 3817979 | 3817980 | 1 | |
| Deletion | Chr11 | 10203001 | 10708000 | 504999 | 24 |
| Deletion | Chr9 | 12995588 | 12995590 | 2 | OsKitaake09g086300 |
| Deletion | Chr2 | 16283309 | 16283311 | 2 | |
| Deletion | Chr5 | 19466134 | 19466143 | 9 | |
| Deletion | Chr4 | 31474035 | 31474053 | 18 | |
| Deletion | Chr3 | 33593364 | 33593366 | 2 | |
| Deletion | Chr4 | 34378966 | 34378967 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 6785620 | 6785623 | 2 | OsKitaake05g068400  |