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| Mutant Information |
|---|
| Mutant Name | FN-334 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-334 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1924167 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 12862555 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 43137962 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 14245775 | A-T | Homo | SPLICE_SITE_REGION | |
| SBS | Chr2 | 32610324 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 32610325 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33180114 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 161670 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 15718786 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 22976842 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 2767338 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3023334 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 9186176 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 24434916 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g217900 |
| SBS | Chr7 | 24460161 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23679027 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 3552978 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 7155178 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 7185511 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4821211 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 14060730 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 14127565 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 17831912 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18631333 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 6386945 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 25218503 | G-A | Homo | INTRON |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 90225 | 90930 | 705 | |
| Deletion | Chr4 | 598925 | 599069 | 144 | |
| Deletion | Chr12 | 3922001 | 3958000 | 35999 | 4 |
| Deletion | Chr4 | 6012001 | 6101000 | 88999 | 5 |
| Deletion | Chr4 | 6106001 | 6330000 | 223999 | 15 |
| Deletion | Chr3 | 9608383 | 9608387 | 4 | OsKitaake03g130600 |
| Deletion | Chr10 | 10764959 | 10764960 | 1 | |
| Deletion | Chr10 | 11829471 | 11829472 | 1 | |
| Deletion | Chr4 | 17815721 | 17815728 | 7 | |
| Deletion | Chr6 | 20204336 | 20204384 | 48 | |
| Deletion | Chr12 | 25221911 | 25221913 | 2 | OsKitaake12g205300 |
| Deletion | Chr12 | 25470060 | 25470061 | 1 | |
| Deletion | Chr3 | 25768001 | 25786000 | 17999 | OsKitaake03g271900 |
| Deletion | Chr6 | 26694347 | 26694348 | 1 | |
| Deletion | Chr5 | 26880063 | 26880064 | 1 | |
| Deletion | Chr11 | 29582277 | 29582323 | 46 | |
| Deletion | Chr2 | 37072073 | 37072075 | 2 | OsKitaake02g398400 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 5266104 | 5266106 | 1 | |
| Insertion | Chr3 | 26310606 | 26310609 | 2 | |
| Insertion | Chr5 | 12424107 | 12424109 | 1 | |
| Insertion | Chr11 | 24460359 | 24460361 | 1 |