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Mutant Information

Mutant Name	FN-335 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-335 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2471663 A-C Hetero INTERGENIC
SBS Chr1 7694176 C-T Hetero INTERGENIC
SBS Chr1 14155912 C-T Homo INTERGENIC
SBS Chr1 39077719 C-T Hetero INTERGENIC
SBS Chr2 10497615 G-A Homo INTERGENIC
SBS Chr2 16018170 A-G Homo INTERGENIC
SBS Chr2 22011490 A-T Hetero INTRON
SBS Chr3 773776 C-T Hetero INTERGENIC
SBS Chr3 15023750 T-A Hetero INTERGENIC
SBS Chr3 36878465 G-A Hetero INTERGENIC
SBS Chr4 12503333 C-T Hetero INTERGENIC
SBS Chr4 17622149 G-A Hetero INTERGENIC
SBS Chr4 24965559 G-T Hetero INTRON
SBS Chr4 26318425 A-G Hetero INTRON
SBS Chr4 27103828 A-T Hetero INTERGENIC
SBS Chr5 6055925 G-A Hetero INTERGENIC
SBS Chr6 942283 G-A Hetero INTERGENIC
SBS Chr6 7574859 G-A Hetero INTERGENIC
SBS Chr6 20232442 G-A Hetero INTERGENIC
SBS Chr7 5371929 C-A Homo INTERGENIC
SBS Chr7 6233756 C-G Homo INTERGENIC
SBS Chr7 18691997 A-T Homo INTERGENIC
SBS Chr7 18691999 A-T Homo INTERGENIC
SBS Chr7 20826231 C-A Hetero INTERGENIC
SBS Chr7 23175842 G-C Hetero START_GAINED
SBS Chr7 25408328 A-T Hetero UTR_5_PRIME
SBS Chr9 20505612 G-T Hetero INTERGENIC
SBS Chr9 20505613 C-T Hetero INTERGENIC
SBS Chr9 22738793 T-C Hetero INTRON
SBS Chr10 1833816 T-A Hetero INTERGENIC
SBS Chr10 11121826 G-C Homo INTERGENIC
SBS Chr10 14276624 G-T Homo INTERGENIC
SBS Chr10 16757259 A-G Homo INTERGENIC
SBS Chr11 12905080 G-A Hetero INTERGENIC
SBS Chr11 13921781 C-T Hetero INTERGENIC
SBS Chr11 15544857 A-T Hetero INTERGENIC
SBS Chr11 15776681 C-T Hetero INTERGENIC
SBS Chr12 5585476 A-T Hetero INTERGENIC
SBS Chr12 11228589 C-T Hetero INTERGENIC
SBS Chr12 12188725 T-C Hetero INTERGENIC
SBS Chr12 17538682 G-A Hetero INTERGENIC
SBS Chr12 24600251 G-A Hetero INTERGENIC
SBS Chr12 24800659 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g201200

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 10155284 10155285 1 OsKitaake02g121901
Deletion Chr8 12398998 12398999 1
Deletion Chr11 12526345 12526499 154
Deletion Chr11 14894877 14894879 2
Deletion Chr10 14930557 14930564 7
Deletion Chr4 16102613 16102620 7
Deletion Chr9 16141056 16141058 2
Deletion Chr1 17243158 17243165 7
Deletion Chr1 18187231 18187232 1
Deletion Chr8 19911145 19911154 9
Deletion Chr1 20736851 20736869 18
Deletion Chr2 22954129 22954132 3
Deletion Chr11 23125823 23125825 2
Deletion Chr11 24811230 24811231 1
Deletion Chr4 27936636 27936637 1 OsKitaake04g207000
Deletion Chr1 31710777 31710779 2
Deletion Chr3 36659400 36659401 1
Deletion Chr1 42062363 42062364 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 9601603 9601606 2
Insertion Chr10 4427109 4427111 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 33935284 34185936 2
Inversion Chr3 33935287 34185904 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2471663	A-C	Hetero	INTERGENIC
SBS	Chr1	7694176	C-T	Hetero	INTERGENIC
SBS	Chr1	14155912	C-T	Homo	INTERGENIC
SBS	Chr1	39077719	C-T	Hetero	INTERGENIC
SBS	Chr2	10497615	G-A	Homo	INTERGENIC
SBS	Chr2	16018170	A-G	Homo	INTERGENIC
SBS	Chr2	22011490	A-T	Hetero	INTRON
SBS	Chr3	773776	C-T	Hetero	INTERGENIC
SBS	Chr3	15023750	T-A	Hetero	INTERGENIC
SBS	Chr3	36878465	G-A	Hetero	INTERGENIC
SBS	Chr4	12503333	C-T	Hetero	INTERGENIC
SBS	Chr4	17622149	G-A	Hetero	INTERGENIC
SBS	Chr4	24965559	G-T	Hetero	INTRON
SBS	Chr4	26318425	A-G	Hetero	INTRON
SBS	Chr4	27103828	A-T	Hetero	INTERGENIC
SBS	Chr5	6055925	G-A	Hetero	INTERGENIC
SBS	Chr6	942283	G-A	Hetero	INTERGENIC
SBS	Chr6	7574859	G-A	Hetero	INTERGENIC
SBS	Chr6	20232442	G-A	Hetero	INTERGENIC
SBS	Chr7	5371929	C-A	Homo	INTERGENIC
SBS	Chr7	6233756	C-G	Homo	INTERGENIC
SBS	Chr7	18691997	A-T	Homo	INTERGENIC
SBS	Chr7	18691999	A-T	Homo	INTERGENIC
SBS	Chr7	20826231	C-A	Hetero	INTERGENIC
SBS	Chr7	23175842	G-C	Hetero	START_GAINED
SBS	Chr7	25408328	A-T	Hetero	UTR_5_PRIME
SBS	Chr9	20505612	G-T	Hetero	INTERGENIC
SBS	Chr9	20505613	C-T	Hetero	INTERGENIC
SBS	Chr9	22738793	T-C	Hetero	INTRON
SBS	Chr10	1833816	T-A	Hetero	INTERGENIC
SBS	Chr10	11121826	G-C	Homo	INTERGENIC
SBS	Chr10	14276624	G-T	Homo	INTERGENIC
SBS	Chr10	16757259	A-G	Homo	INTERGENIC
SBS	Chr11	12905080	G-A	Hetero	INTERGENIC
SBS	Chr11	13921781	C-T	Hetero	INTERGENIC
SBS	Chr11	15544857	A-T	Hetero	INTERGENIC
SBS	Chr11	15776681	C-T	Hetero	INTERGENIC
SBS	Chr12	5585476	A-T	Hetero	INTERGENIC
SBS	Chr12	11228589	C-T	Hetero	INTERGENIC
SBS	Chr12	12188725	T-C	Hetero	INTERGENIC
SBS	Chr12	17538682	G-A	Hetero	INTERGENIC
SBS	Chr12	24600251	G-A	Hetero	INTERGENIC
SBS	Chr12	24800659	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g201200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr8	12398998	12398999	1
Deletion	Chr11	12526345	12526499	154
Deletion	Chr11	14894877	14894879	2
Deletion	Chr10	14930557	14930564	7
Deletion	Chr4	16102613	16102620	7
Deletion	Chr9	16141056	16141058	2
Deletion	Chr1	17243158	17243165	7
Deletion	Chr1	18187231	18187232	1
Deletion	Chr8	19911145	19911154	9
Deletion	Chr1	20736851	20736869	18
Deletion	Chr2	22954129	22954132	3
Deletion	Chr11	23125823	23125825	2
Deletion	Chr11	24811230	24811231	1
Deletion	Chr4	27936636	27936637	1	OsKitaake04g207000
Deletion	Chr1	31710777	31710779	2
Deletion	Chr3	36659400	36659401	1
Deletion	Chr1	42062363	42062364	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	33935284	34185936	2
Inversion	Chr3	33935287	34185904	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes