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Mutant Information

Mutant Name	FN-336 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-336 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 42081900 A-T Hetero INTERGENIC
SBS Chr1 42829306 C-T Hetero INTERGENIC
SBS Chr2 8895654 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g111800
SBS Chr2 10483788 C-G Hetero INTERGENIC
SBS Chr2 13144063 A-G Homo NON_SYNONYMOUS_CODING OsKitaake02g146300
SBS Chr2 22300881 A-G Homo INTRON
SBS Chr2 34177998 T-C Hetero INTRON
SBS Chr4 5861128 T-G Homo INTERGENIC
SBS Chr4 26067865 G-A Hetero INTERGENIC
SBS Chr5 24923006 T-C Hetero INTERGENIC
SBS Chr5 26574824 A-T Hetero INTERGENIC
SBS Chr5 27481815 G-A Hetero INTERGENIC
SBS Chr6 11347256 A-C Hetero INTERGENIC
SBS Chr6 13086239 A-C Hetero INTERGENIC
SBS Chr6 14278992 G-A Hetero INTERGENIC
SBS Chr6 14278993 T-G Hetero INTERGENIC
SBS Chr6 25795556 T-C Hetero INTERGENIC
SBS Chr7 3372197 G-T Hetero SPLICE_SITE_REGION
SBS Chr7 3929674 A-T Hetero INTERGENIC
SBS Chr7 3929675 A-T Hetero INTERGENIC
SBS Chr7 14120267 T-G Hetero INTERGENIC
SBS Chr7 22423440 A-C Homo INTERGENIC
SBS Chr8 10460 T-C Homo INTERGENIC
SBS Chr8 12813434 G-C Hetero INTERGENIC
SBS Chr8 24313305 A-T Hetero INTERGENIC
SBS Chr9 4892729 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g028000
SBS Chr9 16773955 T-C Homo INTERGENIC
SBS Chr11 12448104 A-G Homo INTERGENIC
SBS Chr11 25067085 C-T Hetero UTR_3_PRIME
SBS Chr12 307437 C-T Hetero UTR_3_PRIME
SBS Chr12 25529190 G-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 5126001 5158000 31999 OsKitaake08g056000
Deletion Chr12 6521873 6521880 7
Deletion Chr10 8670277 8670443 166
Deletion Chr4 10868128 10868129 1
Deletion Chr5 12028676 12028678 2
Deletion Chr7 13718001 13730000 11999
Deletion Chr1 15229229 15229231 2
Deletion Chr11 15320908 15320913 5
Deletion Chr11 15922621 15922623 2 OsKitaake11g127700
Deletion Chr9 15923319 15923321 2
Deletion Chr7 16381069 16381159 90
Deletion Chr10 16512532 16512782 250 OsKitaake10g112200
Deletion Chr6 18024105 18024108 3 OsKitaake06g165800
Deletion Chr2 21014964 21014966 2
Deletion Chr11 24342192 24342230 38
Deletion Chr1 27080803 27080913 110
Deletion Chr6 27159774 27159776 2
Deletion Chr1 31098174 31098182 8 OsKitaake01g310200

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 12594783 12594785 1
Insertion Chr6 17621 17623 1
Insertion Chr6 7853292 7853295 2
Insertion Chr8 650878 650882 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	42081900	A-T	Hetero	INTERGENIC
SBS	Chr1	42829306	C-T	Hetero	INTERGENIC
SBS	Chr2	8895654	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g111800
SBS	Chr2	10483788	C-G	Hetero	INTERGENIC
SBS	Chr2	13144063	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g146300
SBS	Chr2	22300881	A-G	Homo	INTRON
SBS	Chr2	34177998	T-C	Hetero	INTRON
SBS	Chr4	5861128	T-G	Homo	INTERGENIC
SBS	Chr4	26067865	G-A	Hetero	INTERGENIC
SBS	Chr5	24923006	T-C	Hetero	INTERGENIC
SBS	Chr5	26574824	A-T	Hetero	INTERGENIC
SBS	Chr5	27481815	G-A	Hetero	INTERGENIC
SBS	Chr6	11347256	A-C	Hetero	INTERGENIC
SBS	Chr6	13086239	A-C	Hetero	INTERGENIC
SBS	Chr6	14278992	G-A	Hetero	INTERGENIC
SBS	Chr6	14278993	T-G	Hetero	INTERGENIC
SBS	Chr6	25795556	T-C	Hetero	INTERGENIC
SBS	Chr7	3372197	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr7	3929674	A-T	Hetero	INTERGENIC
SBS	Chr7	3929675	A-T	Hetero	INTERGENIC
SBS	Chr7	14120267	T-G	Hetero	INTERGENIC
SBS	Chr7	22423440	A-C	Homo	INTERGENIC
SBS	Chr8	10460	T-C	Homo	INTERGENIC
SBS	Chr8	12813434	G-C	Hetero	INTERGENIC
SBS	Chr8	24313305	A-T	Hetero	INTERGENIC
SBS	Chr9	4892729	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g028000
SBS	Chr9	16773955	T-C	Homo	INTERGENIC
SBS	Chr11	12448104	A-G	Homo	INTERGENIC
SBS	Chr11	25067085	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	307437	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	25529190	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	5126001	5158000	31999	OsKitaake08g056000
Deletion	Chr12	6521873	6521880	7
Deletion	Chr10	8670277	8670443	166
Deletion	Chr4	10868128	10868129	1
Deletion	Chr5	12028676	12028678	2
Deletion	Chr7	13718001	13730000	11999
Deletion	Chr1	15229229	15229231	2
Deletion	Chr11	15320908	15320913	5
Deletion	Chr11	15922621	15922623	2	OsKitaake11g127700
Deletion	Chr9	15923319	15923321	2
Deletion	Chr7	16381069	16381159	90
Deletion	Chr10	16512532	16512782	250	OsKitaake10g112200
Deletion	Chr6	18024105	18024108	3	OsKitaake06g165800
Deletion	Chr2	21014964	21014966	2
Deletion	Chr11	24342192	24342230	38
Deletion	Chr1	27080803	27080913	110
Deletion	Chr6	27159774	27159776	2
Deletion	Chr1	31098174	31098182	8	OsKitaake01g310200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes