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Mutant Information

Mutant Name	FN-338 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-338 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9299973 A-C Homo INTERGENIC
SBS Chr1 11887681 A-T Hetero INTERGENIC
SBS Chr1 14363954 A-G Hetero INTERGENIC
SBS Chr1 29378704 T-C Hetero UTR_3_PRIME
SBS Chr1 30627101 G-A Hetero INTERGENIC
SBS Chr2 13054817 C-T Homo INTERGENIC
SBS Chr2 15575532 T-A Homo INTERGENIC
SBS Chr2 15575533 T-A Homo INTERGENIC
SBS Chr2 21311185 T-C Hetero INTERGENIC
SBS Chr2 23111850 T-A Hetero INTERGENIC
SBS Chr2 24891255 G-A Hetero INTERGENIC
SBS Chr3 10169147 G-A Hetero INTRON
SBS Chr3 36136459 G-A Hetero INTERGENIC
SBS Chr4 8826861 G-A Hetero INTERGENIC
SBS Chr4 25070421 A-T Hetero INTERGENIC
SBS Chr4 25767605 G-A Hetero INTRON
SBS Chr5 15956607 T-A Homo INTERGENIC
SBS Chr6 24552931 C-A Hetero UTR_3_PRIME
SBS Chr7 23355179 G-T Hetero INTERGENIC
SBS Chr7 28628147 C-T Homo INTERGENIC
SBS Chr9 12218193 T-C Homo INTERGENIC
SBS Chr9 21830041 C-T Homo INTERGENIC
SBS Chr10 14097092 G-A Hetero INTERGENIC
SBS Chr11 15941753 C-A Hetero INTRON
SBS Chr12 10621429 C-T Hetero INTERGENIC
SBS Chr12 15685293 A-T Homo INTERGENIC
SBS Chr12 15955143 A-G Homo INTERGENIC
SBS Chr12 26159939 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 107143 107144 1
Deletion Chr1 1483299 1483344 45
Deletion Chr7 5096963 5096967 4
Deletion Chr6 5698794 5698796 2
Deletion Chr9 7641682 7641683 1
Deletion Chr11 16429697 16429822 125
Deletion Chr9 21637168 21637179 11
Deletion Chr4 23126672 23126690 18
Deletion Chr12 24815840 24815857 17
Deletion Chr2 29431343 29431345 2
Deletion Chr4 30212752 30212769 17

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 11224004 11224006 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 15193549 15632294

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 16367635 Chr1 8351841 OsKitaake11g130300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9299973	A-C	Homo	INTERGENIC
SBS	Chr1	11887681	A-T	Hetero	INTERGENIC
SBS	Chr1	14363954	A-G	Hetero	INTERGENIC
SBS	Chr1	29378704	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	30627101	G-A	Hetero	INTERGENIC
SBS	Chr2	13054817	C-T	Homo	INTERGENIC
SBS	Chr2	15575532	T-A	Homo	INTERGENIC
SBS	Chr2	15575533	T-A	Homo	INTERGENIC
SBS	Chr2	21311185	T-C	Hetero	INTERGENIC
SBS	Chr2	23111850	T-A	Hetero	INTERGENIC
SBS	Chr2	24891255	G-A	Hetero	INTERGENIC
SBS	Chr3	10169147	G-A	Hetero	INTRON
SBS	Chr3	36136459	G-A	Hetero	INTERGENIC
SBS	Chr4	8826861	G-A	Hetero	INTERGENIC
SBS	Chr4	25070421	A-T	Hetero	INTERGENIC
SBS	Chr4	25767605	G-A	Hetero	INTRON
SBS	Chr5	15956607	T-A	Homo	INTERGENIC
SBS	Chr6	24552931	C-A	Hetero	UTR_3_PRIME
SBS	Chr7	23355179	G-T	Hetero	INTERGENIC
SBS	Chr7	28628147	C-T	Homo	INTERGENIC
SBS	Chr9	12218193	T-C	Homo	INTERGENIC
SBS	Chr9	21830041	C-T	Homo	INTERGENIC
SBS	Chr10	14097092	G-A	Hetero	INTERGENIC
SBS	Chr11	15941753	C-A	Hetero	INTRON
SBS	Chr12	10621429	C-T	Hetero	INTERGENIC
SBS	Chr12	15685293	A-T	Homo	INTERGENIC
SBS	Chr12	15955143	A-G	Homo	INTERGENIC
SBS	Chr12	26159939	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	107143	107144	1
Deletion	Chr1	1483299	1483344	45
Deletion	Chr7	5096963	5096967	4
Deletion	Chr6	5698794	5698796	2
Deletion	Chr9	7641682	7641683	1
Deletion	Chr11	16429697	16429822	125
Deletion	Chr9	21637168	21637179	11
Deletion	Chr4	23126672	23126690	18
Deletion	Chr12	24815840	24815857	17
Deletion	Chr2	29431343	29431345	2
Deletion	Chr4	30212752	30212769	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	15193549	15632294

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes