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| Mutant Information |
|---|
| Mutant Name | FN-339 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-339 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8190121 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16601343 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 2415455 | G-T | Homo | INTRON | |
| SBS | Chr2 | 4508571 | C-A | Homo | INTRON | |
| SBS | Chr2 | 19571398 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27954981 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 3088202 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 14646869 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 25609895 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1996331 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 2025856 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20235183 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 28196630 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 28798127 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 3011952 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g041500 |
| SBS | Chr6 | 15155162 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 24656899 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g219600 |
| SBS | Chr8 | 5736771 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18851322 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19766526 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 528223 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4001072 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 12737799 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 24056692 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 10165249 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11141519 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 8460881 | G-A | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 3625550 | 3625722 | 172 | |
| Deletion | Chr7 | 4649935 | 4649937 | 2 | |
| Deletion | Chr8 | 5290056 | 5290058 | 2 | |
| Deletion | Chr9 | 7625935 | 7625937 | 2 | |
| Deletion | Chr10 | 9708544 | 9708623 | 79 | |
| Deletion | Chr4 | 10248875 | 10248876 | 1 | |
| Deletion | Chr12 | 10655004 | 10655011 | 7 | |
| Deletion | Chr12 | 12668213 | 12668214 | 1 | |
| Deletion | Chr7 | 13003084 | 13003253 | 169 | |
| Deletion | Chr11 | 13627337 | 13627339 | 2 | |
| Deletion | Chr5 | 15418922 | 15418930 | 8 | |
| Deletion | Chr8 | 16341001 | 16584000 | 242999 | 17 |
| Deletion | Chr8 | 16596001 | 16649000 | 52999 | OsKitaake08g127400 |
| Deletion | Chr2 | 16761863 | 16761864 | 1 | |
| Deletion | Chr8 | 17882631 | 17882632 | 1 | |
| Deletion | Chr11 | 18934231 | 18934232 | 1 | OsKitaake11g147600 |
| Deletion | Chr2 | 21226792 | 21226794 | 2 | |
| Deletion | Chr7 | 23198334 | 23198424 | 90 | |
| Deletion | Chr3 | 30724133 | 30724135 | 2 | |
| Deletion | Chr2 | 33362556 | 33362561 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 11682007 | 11682010 | 2 | |
| Insertion | Chr4 | 36157070 | 36157072 | 1 | |
| Insertion | Chr8 | 8802213 | 8802216 | 2 | OsKitaake08g080800  |
| Insertion | Chr9 | 15121259 | 15121263 | 3 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 17654948 | Chr4 | 18786962 | |
| Translocation | Chr12 | 17654953 | Chr4 | 18787529 |