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| Mutant Information |
|---|
| Mutant Name | FN-34 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-34 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32431310 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 36486002 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 8644425 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18176188 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 29879973 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 30932858 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 7630678 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g105900 |
| SBS | Chr3 | 11352362 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 23517395 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35830676 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g394550 |
| SBS | Chr4 | 13210871 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 26563906 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 22559269 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 23778787 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 28154045 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6420213 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 14860378 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 25249652 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14770266 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 6743427 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19240579 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 4745771 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 20777194 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g162500 |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 250670 | 250671 | 1 | |
| Deletion | Chr9 | 5797043 | 5797049 | 6 | OsKitaake09g033400 |
| Deletion | Chr9 | 11954950 | 11955041 | 91 | |
| Deletion | Chr10 | 12616115 | 12616116 | 1 | OsKitaake10g076600 |
| Deletion | Chr3 | 14740001 | 14781000 | 40999 | 10 |
| Deletion | Chr3 | 16797374 | 16797375 | 1 | |
| Deletion | Chr6 | 19220001 | 19300000 | 79999 | 5 |
| Deletion | Chr4 | 19457644 | 19457652 | 8 | |
| Deletion | Chr2 | 19952120 | 19952127 | 7 | |
| Deletion | Chr11 | 20127401 | 20127404 | 3 | |
| Deletion | Chr2 | 20781764 | 20781770 | 6 | |
| Deletion | Chr5 | 25628419 | 25628536 | 117 | |
| Deletion | Chr4 | 26004570 | 26004577 | 7 | |
| Deletion | Chr7 | 29265418 | 29265530 | 112 | |
| Deletion | Chr2 | 34496329 | 34496332 | 3 | |
| Deletion | Chr1 | 42069504 | 42069690 | 186 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 24265846 | 24265849 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 1088512 | 1523592 | OsKitaake12g023000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 13977433 | Chr1 | 7206634 | OsKitaake11g117300 |
| Translocation | Chr11 | 13977438 | Chr1 | 7199201 | OsKitaake11g117300 |