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Mutant Information

Mutant Name	FN-342 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-342 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4466700 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g059500
SBS Chr1 8467989 T-A Hetero INTERGENIC
SBS Chr1 9813219 G-A Hetero INTERGENIC
SBS Chr1 43608342 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g484300
SBS Chr2 2285323 A-G Hetero INTERGENIC
SBS Chr2 2979851 G-A Hetero INTRON
SBS Chr2 7215212 T-A Hetero UTR_3_PRIME
SBS Chr2 10731810 T-G Homo INTERGENIC
SBS Chr3 2514607 C-T Hetero INTERGENIC
SBS Chr3 14867245 G-A Hetero INTERGENIC
SBS Chr3 34989539 G-A Homo INTRON
SBS Chr3 36192618 A-G Hetero INTERGENIC
SBS Chr4 1354814 G-T Hetero INTERGENIC
SBS Chr4 2848323 C-A Hetero INTERGENIC
SBS Chr4 29459346 T-C Hetero INTERGENIC
SBS Chr4 33052215 G-T Hetero INTERGENIC
SBS Chr6 9321640 T-C Homo INTERGENIC
SBS Chr6 10268980 G-A Homo INTERGENIC
SBS Chr6 23975457 G-A Hetero INTERGENIC
SBS Chr6 30946843 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g293300
SBS Chr7 4185341 A-G Hetero INTERGENIC
SBS Chr8 5894405 G-A Hetero INTERGENIC
SBS Chr8 7007401 C-T Hetero INTERGENIC
SBS Chr8 14104329 C-A Homo INTERGENIC
SBS Chr8 16523955 G-T Homo INTERGENIC
SBS Chr9 2193405 T-C Homo INTERGENIC
SBS Chr9 4446638 C-T Homo INTERGENIC
SBS Chr9 12869754 C-T Hetero INTERGENIC
SBS Chr10 7334142 C-T Hetero INTERGENIC
SBS Chr10 9079579 G-A Hetero INTERGENIC
SBS Chr10 12478301 C-T Hetero INTRON
SBS Chr10 14450400 C-G Homo INTERGENIC
SBS Chr11 2107923 G-C Hetero INTERGENIC
SBS Chr11 16631758 C-T Homo INTERGENIC
SBS Chr11 16631759 A-T Homo INTERGENIC
SBS Chr11 28707937 C-T Hetero INTERGENIC
SBS Chr12 5367677 C-G Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 53974 53985 11
Deletion Chr11 763710 763712 2
Deletion Chr12 1237687 1237699 12
Deletion Chr6 7489307 7489308 1
Deletion Chr12 7680932 7680940 8
Deletion Chr1 11569861 11570023 162
Deletion Chr4 12657213 12657217 4
Deletion Chr10 15560245 15560249 4
Deletion Chr11 16619309 16619311 2
Deletion Chr5 22262454 22262768 314 OsKitaake05g182000
Deletion Chr1 23939753 23939755 2
Deletion Chr6 25890493 25890507 14
Deletion Chr1 29172833 29172836 3 OsKitaake01g283900
Deletion Chr1 36591001 36591006 5
Deletion Chr1 43616957 43616958 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15257392 15257395 2
Insertion Chr1 16651010 16651014 3
Insertion Chr1 38024108 38024111 2
Insertion Chr1 39241561 39241564 2
Insertion Chr2 27446171 27446176 4 OsKitaake02g275800
Insertion Chr2 35360528 35360531 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 28441646 28575767 OsKitaake07g272300
Inversion Chr7 28441648 28575792 OsKitaake07g272300

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1340362 Chr6 23611735 OsKitaake11g016600
Translocation Chr12 16196639 Chr3 10848250
Translocation Chr12 16196653 Chr3 10845477

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4466700	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g059500
SBS	Chr1	8467989	T-A	Hetero	INTERGENIC
SBS	Chr1	9813219	G-A	Hetero	INTERGENIC
SBS	Chr1	43608342	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g484300
SBS	Chr2	2285323	A-G	Hetero	INTERGENIC
SBS	Chr2	2979851	G-A	Hetero	INTRON
SBS	Chr2	7215212	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	10731810	T-G	Homo	INTERGENIC
SBS	Chr3	2514607	C-T	Hetero	INTERGENIC
SBS	Chr3	14867245	G-A	Hetero	INTERGENIC
SBS	Chr3	34989539	G-A	Homo	INTRON
SBS	Chr3	36192618	A-G	Hetero	INTERGENIC
SBS	Chr4	1354814	G-T	Hetero	INTERGENIC
SBS	Chr4	2848323	C-A	Hetero	INTERGENIC
SBS	Chr4	29459346	T-C	Hetero	INTERGENIC
SBS	Chr4	33052215	G-T	Hetero	INTERGENIC
SBS	Chr6	9321640	T-C	Homo	INTERGENIC
SBS	Chr6	10268980	G-A	Homo	INTERGENIC
SBS	Chr6	23975457	G-A	Hetero	INTERGENIC
SBS	Chr6	30946843	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g293300
SBS	Chr7	4185341	A-G	Hetero	INTERGENIC
SBS	Chr8	5894405	G-A	Hetero	INTERGENIC
SBS	Chr8	7007401	C-T	Hetero	INTERGENIC
SBS	Chr8	14104329	C-A	Homo	INTERGENIC
SBS	Chr8	16523955	G-T	Homo	INTERGENIC
SBS	Chr9	2193405	T-C	Homo	INTERGENIC
SBS	Chr9	4446638	C-T	Homo	INTERGENIC
SBS	Chr9	12869754	C-T	Hetero	INTERGENIC
SBS	Chr10	7334142	C-T	Hetero	INTERGENIC
SBS	Chr10	9079579	G-A	Hetero	INTERGENIC
SBS	Chr10	12478301	C-T	Hetero	INTRON
SBS	Chr10	14450400	C-G	Homo	INTERGENIC
SBS	Chr11	2107923	G-C	Hetero	INTERGENIC
SBS	Chr11	16631758	C-T	Homo	INTERGENIC
SBS	Chr11	16631759	A-T	Homo	INTERGENIC
SBS	Chr11	28707937	C-T	Hetero	INTERGENIC
SBS	Chr12	5367677	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	53974	53985	11
Deletion	Chr11	763710	763712	2
Deletion	Chr12	1237687	1237699	12
Deletion	Chr6	7489307	7489308	1
Deletion	Chr12	7680932	7680940	8
Deletion	Chr1	11569861	11570023	162
Deletion	Chr4	12657213	12657217	4
Deletion	Chr10	15560245	15560249	4
Deletion	Chr11	16619309	16619311	2
Deletion	Chr5	22262454	22262768	314	OsKitaake05g182000
Deletion	Chr1	23939753	23939755	2
Deletion	Chr6	25890493	25890507	14
Deletion	Chr1	29172833	29172836	3	OsKitaake01g283900
Deletion	Chr1	36591001	36591006	5
Deletion	Chr1	43616957	43616958	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	28441646	28575767	OsKitaake07g272300
Inversion	Chr7	28441648	28575792	OsKitaake07g272300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes