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Mutant Information

Mutant Name	FN-344 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-344 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9933766 T-C Homo INTERGENIC
SBS Chr1 35086158 A-G Homo INTERGENIC
SBS Chr2 11351112 T-A Hetero INTERGENIC
SBS Chr2 25075478 G-T Hetero INTERGENIC
SBS Chr2 29810302 C-T Hetero INTERGENIC
SBS Chr2 31126006 G-T Hetero INTRON
SBS Chr3 33657869 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g362000
SBS Chr3 37159449 T-C Hetero INTRON
SBS Chr3 37781051 A-C Hetero SPLICE_SITE_REGION
SBS Chr4 7590183 A-T Hetero INTERGENIC
SBS Chr4 36452179 A-T Homo UTR_3_PRIME
SBS Chr4 36707733 C-A Hetero INTRON
SBS Chr5 5224680 A-T Hetero INTRON
SBS Chr6 13747426 C-T Homo INTRON
SBS Chr6 18143440 C-T Homo INTERGENIC
SBS Chr6 18143452 A-T Homo INTERGENIC
SBS Chr7 6772903 C-T Homo INTERGENIC
SBS Chr7 7747136 T-G Hetero INTERGENIC
SBS Chr7 13661720 T-C Homo INTERGENIC
SBS Chr7 15447818 T-C Homo INTERGENIC
SBS Chr8 3712492 G-A Hetero INTERGENIC
SBS Chr8 15460192 A-G Hetero INTERGENIC
SBS Chr8 19883656 C-T Hetero INTERGENIC
SBS Chr8 22564858 G-A Hetero INTERGENIC
SBS Chr8 23798033 T-G Homo INTERGENIC
SBS Chr8 27179637 C-A Hetero INTERGENIC
SBS Chr8 28218141 A-G Hetero INTERGENIC
SBS Chr9 11526352 A-G Hetero INTRON
SBS Chr9 12325135 C-G Hetero INTERGENIC
SBS Chr9 17342362 A-T Hetero INTRON
SBS Chr9 18301384 C-T Hetero INTERGENIC
SBS Chr10 3291108 T-A Hetero INTERGENIC
SBS Chr10 3291109 G-A Hetero INTERGENIC
SBS Chr10 10589691 G-A Homo INTERGENIC
SBS Chr10 13717512 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g083400
SBS Chr11 871742 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g011401
SBS Chr11 3453211 T-C Hetero INTERGENIC
SBS Chr11 5268895 C-G Hetero INTERGENIC
SBS Chr11 29309774 G-A Hetero INTERGENIC
SBS Chr12 3951319 A-T Hetero INTRON
SBS Chr12 7754287 C-A Homo INTERGENIC
SBS Chr12 9797881 G-T Hetero INTRON
SBS Chr12 10951295 C-T Hetero INTERGENIC
SBS Chr12 26373845 G-T Hetero INTERGENIC

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 937538 937544 6
Deletion Chr11 1426892 1426896 4
Deletion Chr10 2699001 2757000 57999 5
Deletion Chr10 3289956 3289958 2
Deletion Chr3 3570771 3570773 2
Deletion Chr2 5536216 5536226 10 OsKitaake02g076100
Deletion Chr1 7096527 7096529 2 OsKitaake01g088800
Deletion Chr3 7431856 7431857 1
Deletion Chr5 8507365 8507375 10
Deletion Chr3 10400716 10400719 3
Deletion Chr3 11546581 11546595 14
Deletion Chr8 13852025 13852026 1
Deletion Chr8 13924848 13924849 1
Deletion Chr1 15406837 15406839 2
Deletion Chr6 16768185 16768199 14
Deletion Chr2 17889271 17889274 3
Deletion Chr6 21897556 21897560 4
Deletion Chr7 22355753 22355757 4 OsKitaake07g189401
Deletion Chr6 22562251 22562252 1 OsKitaake06g198300
Deletion Chr4 24395066 24395072 6
Deletion Chr3 25892954 25892972 18
Deletion Chr5 26913351 26913357 6
Deletion Chr1 27479373 27479382 9
Deletion Chr4 28441001 28496000 54999 9
Deletion Chr11 29256174 29256181 7
Deletion Chr3 29575140 29575143 3
Deletion Chr2 29671614 29671624 10
Deletion Chr2 34746951 34746953 2
Deletion Chr2 36264018 36264019 1 OsKitaake02g383500

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3465078 3465081 2
Insertion Chr1 36723632 36723635 2
Insertion Chr7 24833154 24833161 6
Insertion Chr8 24508015 24508021 5

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3862698 4217784
Inversion Chr4 28441361 28449205

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1196689 Chr4 28493280 OsKitaake04g212600
Translocation Chr12 3860270 Chr6 24222973
Translocation Chr12 3860291 Chr7 3339678
Translocation Chr12 3862690 Chr7 3339466
Translocation Chr6 24220398 Chr5 5798312
Translocation Chr6 24222964 Chr5 5798299
Translocation Chr6 24223742 Chr4 28449200 OsKitaake06g214700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9933766	T-C	Homo	INTERGENIC
SBS	Chr1	35086158	A-G	Homo	INTERGENIC
SBS	Chr2	11351112	T-A	Hetero	INTERGENIC
SBS	Chr2	25075478	G-T	Hetero	INTERGENIC
SBS	Chr2	29810302	C-T	Hetero	INTERGENIC
SBS	Chr2	31126006	G-T	Hetero	INTRON
SBS	Chr3	33657869	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g362000
SBS	Chr3	37159449	T-C	Hetero	INTRON
SBS	Chr3	37781051	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr4	7590183	A-T	Hetero	INTERGENIC
SBS	Chr4	36452179	A-T	Homo	UTR_3_PRIME
SBS	Chr4	36707733	C-A	Hetero	INTRON
SBS	Chr5	5224680	A-T	Hetero	INTRON
SBS	Chr6	13747426	C-T	Homo	INTRON
SBS	Chr6	18143440	C-T	Homo	INTERGENIC
SBS	Chr6	18143452	A-T	Homo	INTERGENIC
SBS	Chr7	6772903	C-T	Homo	INTERGENIC
SBS	Chr7	7747136	T-G	Hetero	INTERGENIC
SBS	Chr7	13661720	T-C	Homo	INTERGENIC
SBS	Chr7	15447818	T-C	Homo	INTERGENIC
SBS	Chr8	3712492	G-A	Hetero	INTERGENIC
SBS	Chr8	15460192	A-G	Hetero	INTERGENIC
SBS	Chr8	19883656	C-T	Hetero	INTERGENIC
SBS	Chr8	22564858	G-A	Hetero	INTERGENIC
SBS	Chr8	23798033	T-G	Homo	INTERGENIC
SBS	Chr8	27179637	C-A	Hetero	INTERGENIC
SBS	Chr8	28218141	A-G	Hetero	INTERGENIC
SBS	Chr9	11526352	A-G	Hetero	INTRON
SBS	Chr9	12325135	C-G	Hetero	INTERGENIC
SBS	Chr9	17342362	A-T	Hetero	INTRON
SBS	Chr9	18301384	C-T	Hetero	INTERGENIC
SBS	Chr10	3291108	T-A	Hetero	INTERGENIC
SBS	Chr10	3291109	G-A	Hetero	INTERGENIC
SBS	Chr10	10589691	G-A	Homo	INTERGENIC
SBS	Chr10	13717512	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g083400
SBS	Chr11	871742	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g011401
SBS	Chr11	3453211	T-C	Hetero	INTERGENIC
SBS	Chr11	5268895	C-G	Hetero	INTERGENIC
SBS	Chr11	29309774	G-A	Hetero	INTERGENIC
SBS	Chr12	3951319	A-T	Hetero	INTRON
SBS	Chr12	7754287	C-A	Homo	INTERGENIC
SBS	Chr12	9797881	G-T	Hetero	INTRON
SBS	Chr12	10951295	C-T	Hetero	INTERGENIC
SBS	Chr12	26373845	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	937538	937544	6
Deletion	Chr11	1426892	1426896	4
Deletion	Chr10	2699001	2757000	57999	5
Deletion	Chr10	3289956	3289958	2
Deletion	Chr3	3570771	3570773	2
Deletion	Chr2	5536216	5536226	10	OsKitaake02g076100
Deletion	Chr1	7096527	7096529	2	OsKitaake01g088800
Deletion	Chr3	7431856	7431857	1
Deletion	Chr5	8507365	8507375	10
Deletion	Chr3	10400716	10400719	3
Deletion	Chr3	11546581	11546595	14
Deletion	Chr8	13852025	13852026	1
Deletion	Chr8	13924848	13924849	1
Deletion	Chr1	15406837	15406839	2
Deletion	Chr6	16768185	16768199	14
Deletion	Chr2	17889271	17889274	3
Deletion	Chr6	21897556	21897560	4
Deletion	Chr7	22355753	22355757	4	OsKitaake07g189401
Deletion	Chr6	22562251	22562252	1	OsKitaake06g198300
Deletion	Chr4	24395066	24395072	6
Deletion	Chr3	25892954	25892972	18
Deletion	Chr5	26913351	26913357	6
Deletion	Chr1	27479373	27479382	9
Deletion	Chr4	28441001	28496000	54999	9
Deletion	Chr11	29256174	29256181	7
Deletion	Chr3	29575140	29575143	3
Deletion	Chr2	29671614	29671624	10
Deletion	Chr2	34746951	34746953	2
Deletion	Chr2	36264018	36264019	1	OsKitaake02g383500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3862698	4217784
Inversion	Chr4	28441361	28449205

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes