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Mutant Information

Mutant Name	FN-345 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-345 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 30079601 A-T Hetero INTERGENIC
SBS Chr2 617964 A-T Hetero INTERGENIC
SBS Chr2 26243502 G-A Hetero INTERGENIC
SBS Chr2 32312663 G-A Hetero INTERGENIC
SBS Chr3 161370 G-C Homo INTERGENIC
SBS Chr3 785209 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g012300
SBS Chr3 16933214 G-T Hetero INTERGENIC
SBS Chr3 22862811 C-A Hetero INTRON
SBS Chr3 27524640 T-A Hetero INTERGENIC
SBS Chr3 28523784 C-T Hetero UTR_3_PRIME
SBS Chr3 31363117 T-C Homo INTERGENIC
SBS Chr3 35637463 G-A Homo INTERGENIC
SBS Chr4 883468 T-A Hetero INTERGENIC
SBS Chr4 16212625 C-A Hetero INTERGENIC
SBS Chr4 16212626 C-T Hetero INTERGENIC
SBS Chr4 23452039 T-A Hetero INTRON
SBS Chr4 32571531 T-A Homo INTERGENIC
SBS Chr5 3684175 T-C Hetero INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr6 7100758 C-T Homo INTERGENIC
SBS Chr7 13425488 A-G Homo INTERGENIC
SBS Chr7 18040083 A-T Hetero INTERGENIC
SBS Chr7 26546252 C-T Hetero INTERGENIC
SBS Chr7 26546253 A-T Hetero INTERGENIC
SBS Chr8 9401287 C-T Homo INTERGENIC
SBS Chr9 3986787 G-A Homo SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Homo INTERGENIC
SBS Chr9 6448790 C-A Homo INTERGENIC
SBS Chr9 17797783 C-G Hetero INTERGENIC
SBS Chr9 17797784 C-T Hetero INTERGENIC
SBS Chr10 18151258 G-T Hetero INTERGENIC
SBS Chr10 18151259 G-T Hetero INTERGENIC
SBS Chr10 23171731 T-A Hetero INTERGENIC
SBS Chr11 723288 C-T Homo INTERGENIC
SBS Chr11 17176308 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g134000
SBS Chr11 25439962 G-A Hetero INTERGENIC
SBS Chr11 26366524 A-G Hetero INTERGENIC
SBS Chr12 8259065 T-A Hetero INTRON
SBS Chr12 8259066 T-C Hetero INTRON
SBS Chr12 9301468 G-A Homo INTERGENIC
SBS Chr12 13904972 G-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1352005 1352006 1
Deletion Chr10 2530001 2592000 61999 6
Deletion Chr7 8301454 8301456 2
Deletion Chr6 9974990 9974996 6
Deletion Chr10 12528403 12528419 16
Deletion Chr9 14246380 14246384 4
Deletion Chr3 16074783 16074785 2
Deletion Chr11 20667673 20667681 8
Deletion Chr3 25935725 25935871 146
Deletion Chr4 26172227 26172232 5
Deletion Chr1 31647953 31647959 6 OsKitaake01g318100

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 4429682 4429686 3
Insertion Chr8 21797092 21797095 2
Insertion Chr6 10997 10999 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16030569 16448705 OsKitaake04g075700
Inversion Chr4 16448691 17050609

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 4621042 Chr1 8859948 OsKitaake01g110500
Translocation Chr8 4888075 Chr5 921077 OsKitaake05g011200
Translocation Chr9 6031283 Chr1 30620288 OsKitaake01g303300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30079601	A-T	Hetero	INTERGENIC
SBS	Chr2	617964	A-T	Hetero	INTERGENIC
SBS	Chr2	26243502	G-A	Hetero	INTERGENIC
SBS	Chr2	32312663	G-A	Hetero	INTERGENIC
SBS	Chr3	161370	G-C	Homo	INTERGENIC
SBS	Chr3	785209	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g012300
SBS	Chr3	16933214	G-T	Hetero	INTERGENIC
SBS	Chr3	22862811	C-A	Hetero	INTRON
SBS	Chr3	27524640	T-A	Hetero	INTERGENIC
SBS	Chr3	28523784	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	31363117	T-C	Homo	INTERGENIC
SBS	Chr3	35637463	G-A	Homo	INTERGENIC
SBS	Chr4	883468	T-A	Hetero	INTERGENIC
SBS	Chr4	16212625	C-A	Hetero	INTERGENIC
SBS	Chr4	16212626	C-T	Hetero	INTERGENIC
SBS	Chr4	23452039	T-A	Hetero	INTRON
SBS	Chr4	32571531	T-A	Homo	INTERGENIC
SBS	Chr5	3684175	T-C	Hetero	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr6	7100758	C-T	Homo	INTERGENIC
SBS	Chr7	13425488	A-G	Homo	INTERGENIC
SBS	Chr7	18040083	A-T	Hetero	INTERGENIC
SBS	Chr7	26546252	C-T	Hetero	INTERGENIC
SBS	Chr7	26546253	A-T	Hetero	INTERGENIC
SBS	Chr8	9401287	C-T	Homo	INTERGENIC
SBS	Chr9	3986787	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Homo	INTERGENIC
SBS	Chr9	6448790	C-A	Homo	INTERGENIC
SBS	Chr9	17797783	C-G	Hetero	INTERGENIC
SBS	Chr9	17797784	C-T	Hetero	INTERGENIC
SBS	Chr10	18151258	G-T	Hetero	INTERGENIC
SBS	Chr10	18151259	G-T	Hetero	INTERGENIC
SBS	Chr10	23171731	T-A	Hetero	INTERGENIC
SBS	Chr11	723288	C-T	Homo	INTERGENIC
SBS	Chr11	17176308	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g134000
SBS	Chr11	25439962	G-A	Hetero	INTERGENIC
SBS	Chr11	26366524	A-G	Hetero	INTERGENIC
SBS	Chr12	8259065	T-A	Hetero	INTRON
SBS	Chr12	8259066	T-C	Hetero	INTRON
SBS	Chr12	9301468	G-A	Homo	INTERGENIC
SBS	Chr12	13904972	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1352005	1352006	1
Deletion	Chr10	2530001	2592000	61999	6
Deletion	Chr7	8301454	8301456	2
Deletion	Chr6	9974990	9974996	6
Deletion	Chr10	12528403	12528419	16
Deletion	Chr9	14246380	14246384	4
Deletion	Chr3	16074783	16074785	2
Deletion	Chr11	20667673	20667681	8
Deletion	Chr3	25935725	25935871	146
Deletion	Chr4	26172227	26172232	5
Deletion	Chr1	31647953	31647959	6	OsKitaake01g318100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16030569	16448705	OsKitaake04g075700
Inversion	Chr4	16448691	17050609

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes