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| Mutant Information |
|---|
| Mutant Name | FN-346 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-346 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17889413 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 38200252 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 528623 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 11943010 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13752188 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13879699 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 3891969 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8213020 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 25305455 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 25445696 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33748252 | C-T | Homo | INTRON | |
| SBS | Chr5 | 2553995 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 4570127 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 8298821 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12481152 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15786990 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 19840686 | C-G | Homo | UTR_3_PRIME | |
| SBS | Chr9 | 1598788 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 6262152 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 18573860 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 21873915 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 21958486 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 22594856 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 11763114 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15263400 | C-T | Homo | INTRON | |
| SBS | Chr11 | 15296484 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19850304 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 25898136 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11264378 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18542221 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21385504 | G-T | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 15859 | 15860 | 1 | |
| Deletion | Chr2 | 377720 | 377732 | 12 | |
| Deletion | Chr12 | 1834813 | 1834817 | 4 | OsKitaake12g027900 |
| Deletion | Chr6 | 3321001 | 3339000 | 17999 | 3 |
| Deletion | Chr2 | 4208380 | 4208388 | 8 | |
| Deletion | Chr2 | 4724455 | 4724464 | 9 | |
| Deletion | Chr3 | 6009001 | 6034000 | 24999 | 4 |
| Deletion | Chr4 | 6316762 | 6316780 | 18 | |
| Deletion | Chr8 | 9105938 | 9105941 | 3 | |
| Deletion | Chr3 | 16739732 | 16739904 | 172 | |
| Deletion | Chr1 | 20912798 | 20912802 | 4 | |
| Deletion | Chr9 | 21755231 | 21755238 | 7 | |
| Deletion | Chr5 | 24450628 | 24450630 | 2 | |
| Deletion | Chr7 | 26080246 | 26080247 | 1 | |
| Deletion | Chr7 | 27594524 | 27594528 | 4 | OsKitaake07g257300 |
| Deletion | Chr3 | 34893025 | 34893031 | 6 | |
| Deletion | Chr4 | 36863339 | 36863348 | 9 |
Insertions: 5
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 562971 | 581237 | OsKitaake12g007100 |
| Inversion | Chr12 | 562972 | 581237 | OsKitaake12g007100 |