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| Mutant Information |
|---|
| Mutant Name | FN-348 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-348 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1183852 | T-A | Homo | INTRON | |
| SBS | Chr1 | 5515350 | G-A | Hetero | SPLICE_SITE_ACCEPTOR | OsKitaake01g071000 |
| SBS | Chr1 | 10201256 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 14657160 | G-T | Hetero | INTRON | |
| SBS | Chr1 | 29451519 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 33778648 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 15938629 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 15938630 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 29943781 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 31969425 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 19156106 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 21141514 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 4341308 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4655464 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20649880 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 10447721 | A-C | Homo | INTERGENIC | |
| SBS | Chr8 | 16236241 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17111179 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 22541183 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 7263323 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5739893 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 7368455 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 20629682 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21507643 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14454760 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 3509655 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 12302675 | G-T | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2461848 | 2461854 | 6 | |
| Deletion | Chr2 | 2948130 | 2948131 | 1 | |
| Deletion | Chr7 | 8189730 | 8189738 | 8 | |
| Deletion | Chr5 | 8826001 | 9189000 | 362999 | 28 |
| Deletion | Chr5 | 9192001 | 9495000 | 302999 | 15 |
| Deletion | Chr5 | 12515860 | 12515861 | 1 | |
| Deletion | Chr10 | 12754146 | 12754157 | 11 | OsKitaake10g077701 |
| Deletion | Chr12 | 12968001 | 13019000 | 50999 | |
| Deletion | Chr12 | 13021001 | 13208000 | 186999 | 20 |
| Deletion | Chr12 | 13570001 | 13588000 | 17999 | OsKitaake12g112100 |
| Deletion | Chr6 | 13861730 | 13861731 | 1 | |
| Deletion | Chr7 | 14819713 | 14819720 | 7 | |
| Deletion | Chr2 | 15047608 | 15047611 | 3 | |
| Deletion | Chr12 | 20059001 | 20072000 | 12999 | |
| Deletion | Chr12 | 20091001 | 20103000 | 11999 | |
| Deletion | Chr4 | 25675701 | 25675702 | 1 | |
| Deletion | Chr4 | 31416204 | 31416206 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 19732762 | 19732765 | 2 | |
| Insertion | Chr11 | 12145503 | 12145506 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 4533306 | 4892061 | OsKitaake09g028000 |
| Inversion | Chr9 | 4668954 | 4892080 | OsKitaake09g028000 |
| Inversion | Chr12 | 13430833 | 13571452 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 13208417 | Chr10 | 24017008 | 2 |
| Translocation | Chr10 | 24017007 | Chr6 | 12965674 | OsKitaake10g208300 |
| Translocation | Chr10 | 24017014 | Chr6 | 12964712 | 2 |