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Mutant Information

Mutant Name	FN-349 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-349 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 1046719 T-C Hetero INTRON
SBS Chr2 20676107 T-A Hetero INTERGENIC
SBS Chr2 21849723 A-T Hetero INTRON
SBS Chr2 26884274 T-C Hetero UTR_3_PRIME
SBS Chr3 13454301 G-A Homo INTERGENIC
SBS Chr3 15516116 G-T Hetero INTRON
SBS Chr3 24856830 A-G Hetero INTRON
SBS Chr3 26293963 C-T Hetero INTERGENIC
SBS Chr3 34684022 A-T Hetero INTERGENIC
SBS Chr4 7523885 G-A Hetero INTERGENIC
SBS Chr4 7523886 A-G Hetero INTERGENIC
SBS Chr4 13964515 T-C Hetero INTRON
SBS Chr4 23428474 T-A Hetero INTERGENIC
SBS Chr4 28036046 C-T Homo INTERGENIC
SBS Chr4 35067058 T-A Hetero INTERGENIC
SBS Chr5 4404917 C-A Hetero INTERGENIC
SBS Chr5 24019466 T-C Hetero UTR_3_PRIME
SBS Chr5 24019467 G-A Hetero UTR_3_PRIME
SBS Chr5 27897420 C-T Hetero INTERGENIC
SBS Chr5 28019446 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g258500
SBS Chr6 6160117 A-G Hetero INTERGENIC
SBS Chr6 10902578 C-A Hetero UTR_3_PRIME
SBS Chr6 21551788 A-G Homo INTERGENIC
SBS Chr6 24946391 A-G Homo UTR_3_PRIME
SBS Chr7 5573363 C-T Hetero INTERGENIC
SBS Chr7 8046807 C-T Hetero INTERGENIC
SBS Chr9 2223558 A-T Hetero INTERGENIC
SBS Chr10 3443295 G-A Homo INTERGENIC
SBS Chr11 7714366 T-A Hetero INTERGENIC
SBS Chr11 10599014 G-C Hetero INTERGENIC
SBS Chr12 13974511 C-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 87622 87623 1
Deletion Chr9 3585917 3586098 181
Deletion Chr11 11926001 11974000 47999 2
Deletion Chr1 14471313 14471314 1
Deletion Chr1 16349001 16371000 21999 OsKitaake01g175833
Deletion Chr5 17592505 17592506 1
Deletion Chr5 18306972 18306979 7
Deletion Chr3 20033081 20033534 453
Deletion Chr8 23096001 23221000 124999 11
Deletion Chr12 25836362 25836363 1
Deletion Chr1 26358561 26358562 1
Deletion Chr5 27521001 27534000 12999 2
Deletion Chr5 27537001 27570000 32999 4
Deletion Chr4 27617564 27617571 7
Deletion Chr6 29205880 29205899 19 OsKitaake06g270200
Deletion Chr2 31305143 31305145 2
Deletion Chr3 37060468 37060472 4 OsKitaake03g414100

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 8267973 8267982 8

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 11893923 11922688 OsKitaake11g110800
Inversion Chr11 11893936 11976546
Inversion Chr7 13441939 13566584
Inversion Chr4 34766143 35160865 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7301205 Chr4 34172618
Translocation Chr9 20326344 Chr7 13170855 2
Translocation Chr5 27537399 Chr4 34766135 2
Translocation Chr4 29596715 Chr2 16621642 OsKitaake04g227300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	1046719	T-C	Hetero	INTRON
SBS	Chr2	20676107	T-A	Hetero	INTERGENIC
SBS	Chr2	21849723	A-T	Hetero	INTRON
SBS	Chr2	26884274	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	13454301	G-A	Homo	INTERGENIC
SBS	Chr3	15516116	G-T	Hetero	INTRON
SBS	Chr3	24856830	A-G	Hetero	INTRON
SBS	Chr3	26293963	C-T	Hetero	INTERGENIC
SBS	Chr3	34684022	A-T	Hetero	INTERGENIC
SBS	Chr4	7523885	G-A	Hetero	INTERGENIC
SBS	Chr4	7523886	A-G	Hetero	INTERGENIC
SBS	Chr4	13964515	T-C	Hetero	INTRON
SBS	Chr4	23428474	T-A	Hetero	INTERGENIC
SBS	Chr4	28036046	C-T	Homo	INTERGENIC
SBS	Chr4	35067058	T-A	Hetero	INTERGENIC
SBS	Chr5	4404917	C-A	Hetero	INTERGENIC
SBS	Chr5	24019466	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	24019467	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	27897420	C-T	Hetero	INTERGENIC
SBS	Chr5	28019446	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g258500
SBS	Chr6	6160117	A-G	Hetero	INTERGENIC
SBS	Chr6	10902578	C-A	Hetero	UTR_3_PRIME
SBS	Chr6	21551788	A-G	Homo	INTERGENIC
SBS	Chr6	24946391	A-G	Homo	UTR_3_PRIME
SBS	Chr7	5573363	C-T	Hetero	INTERGENIC
SBS	Chr7	8046807	C-T	Hetero	INTERGENIC
SBS	Chr9	2223558	A-T	Hetero	INTERGENIC
SBS	Chr10	3443295	G-A	Homo	INTERGENIC
SBS	Chr11	7714366	T-A	Hetero	INTERGENIC
SBS	Chr11	10599014	G-C	Hetero	INTERGENIC
SBS	Chr12	13974511	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	87622	87623	1
Deletion	Chr9	3585917	3586098	181
Deletion	Chr11	11926001	11974000	47999	2
Deletion	Chr1	14471313	14471314	1
Deletion	Chr1	16349001	16371000	21999	OsKitaake01g175833
Deletion	Chr5	17592505	17592506	1
Deletion	Chr5	18306972	18306979	7
Deletion	Chr3	20033081	20033534	453
Deletion	Chr8	23096001	23221000	124999	11
Deletion	Chr12	25836362	25836363	1
Deletion	Chr1	26358561	26358562	1
Deletion	Chr5	27521001	27534000	12999	2
Deletion	Chr5	27537001	27570000	32999	4
Deletion	Chr4	27617564	27617571	7
Deletion	Chr6	29205880	29205899	19	OsKitaake06g270200
Deletion	Chr2	31305143	31305145	2
Deletion	Chr3	37060468	37060472	4	OsKitaake03g414100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11893923	11922688	OsKitaake11g110800
Inversion	Chr11	11893936	11976546
Inversion	Chr7	13441939	13566584
Inversion	Chr4	34766143	35160865	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes