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| Mutant Information |
|---|
| Mutant Name | FN-35 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-35 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 39529458 | C-G | Homo | INTRON | |
| SBS | Chr2 | 18616182 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 32993077 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7132781 | A-T | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 10279743 | G-A | Homo | INTRON | |
| SBS | Chr3 | 19292379 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25324089 | G-T | Homo | INTRON | |
| SBS | Chr3 | 29661491 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g309400 |
| SBS | Chr4 | 11563166 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 16381450 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 17600030 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 28087754 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 31040580 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 17409991 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 23465856 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 5506137 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 22128469 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 24818988 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26452175 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 29442018 | C-A | Hetero | INTRON | |
| SBS | Chr7 | 10529822 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 3605522 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 3605523 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 21552717 | A-C | Homo | INTERGENIC | |
| SBS | Chr9 | 9280532 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15926600 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 488112 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 792566 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7076595 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 24123335 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27298642 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 596923 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 6731452 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8336987 | C-T | Homo | INTRON | |
| SBS | Chr12 | 21519852 | A-C | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 88199 | 88219 | 20 | |
| Deletion | Chr8 | 1155782 | 1155788 | 6 | |
| Deletion | Chr7 | 1315620 | 1315621 | 1 | |
| Deletion | Chr12 | 3923880 | 3924006 | 126 | |
| Deletion | Chr12 | 7546241 | 7546242 | 1 | |
| Deletion | Chr3 | 7846317 | 7846318 | 1 | |
| Deletion | Chr10 | 8966227 | 8966230 | 3 | |
| Deletion | Chr3 | 10276473 | 10276486 | 13 | OsKitaake03g140300 |
| Deletion | Chr11 | 12459798 | 12459799 | 1 | |
| Deletion | Chr10 | 12749001 | 13248000 | 498999 | 25 |
| Deletion | Chr1 | 21267776 | 21267777 | 1 | |
| Deletion | Chr2 | 24273976 | 24273978 | 2 | |
| Deletion | Chr12 | 24287884 | 24287885 | 1 | |
| Deletion | Chr4 | 26934951 | 26934961 | 10 | OsKitaake04g195500 |
| Deletion | Chr1 | 27513274 | 27513275 | 1 | |
| Deletion | Chr5 | 29461455 | 29461457 | 2 | |
| Deletion | Chr1 | 31642429 | 31642430 | 1 | |
| Deletion | Chr2 | 34205548 | 34205551 | 3 | |
| Deletion | Chr1 | 41877233 | 41877236 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 9615938 | 9615940 | 1 | |
| Insertion | Chr6 | 87853 | 87856 | 2 |