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Mutant Information

Mutant Name	FN-350 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-350 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5138709 T-A Hetero INTERGENIC
SBS Chr1 6995596 T-C Homo INTERGENIC
SBS Chr1 18190404 C-T Hetero INTERGENIC
SBS Chr1 37002216 G-C Hetero INTERGENIC
SBS Chr2 2919659 G-A Homo INTERGENIC
SBS Chr2 2919771 G-A Homo INTERGENIC
SBS Chr2 2919772 G-A Homo INTERGENIC
SBS Chr2 2919773 T-A Homo INTERGENIC
SBS Chr3 1399332 A-C Hetero INTRON
SBS Chr3 4378758 C-A Hetero INTERGENIC
SBS Chr3 33182969 C-T Hetero INTERGENIC
SBS Chr4 12827018 A-C Homo INTERGENIC
SBS Chr4 14021522 G-C Hetero INTERGENIC
SBS Chr6 8903174 G-C Hetero UTR_3_PRIME
SBS Chr6 10318676 A-G Hetero INTERGENIC
SBS Chr6 17779309 G-A Hetero INTERGENIC
SBS Chr6 28228013 C-T Homo INTERGENIC
SBS Chr7 6487459 G-A Hetero INTERGENIC
SBS Chr7 9421745 T-A Hetero INTERGENIC
SBS Chr7 26473742 G-C Hetero INTRON
SBS Chr7 26527714 T-G Homo INTERGENIC
SBS Chr7 27225082 G-A Homo INTERGENIC
SBS Chr7 27225087 A-C Homo INTERGENIC
SBS Chr8 2136735 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 9233792 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g084200
SBS Chr8 26165994 T-G Homo INTRON
SBS Chr9 316037 T-A Hetero INTERGENIC
SBS Chr9 2308701 C-T Homo INTERGENIC
SBS Chr9 9882153 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g060000
SBS Chr9 15389707 G-A Homo INTERGENIC
SBS Chr10 20440130 G-T Hetero INTERGENIC
SBS Chr11 20438245 C-A Homo INTERGENIC
SBS Chr12 5411934 G-A Hetero INTERGENIC
SBS Chr12 11772279 C-T Hetero INTERGENIC
SBS Chr12 19275166 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g144200
SBS Chr12 21636950 T-C Hetero INTRON
SBS Chr12 22565659 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 5695882 5695886 4
Deletion Chr11 7473084 7473085 1
Deletion Chr6 8922783 8922789 6
Deletion Chr1 15313001 15398000 84999 9
Deletion Chr1 17183686 17183851 165
Deletion Chr7 17803610 17803684 74
Deletion Chr3 18915995 18915996 1
Deletion Chr9 20930643 20930655 12 OsKitaake09g178900
Deletion Chr11 24874394 24874408 14
Deletion Chr7 28830789 28830796 7
Deletion Chr1 29559642 29559643 1 OsKitaake01g289800
Deletion Chr1 37494015 37494017 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43966419 43966424 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 14583461 14599869
Inversion Chr7 14583462 14599869

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 11837417 Chr4 34898457 OsKitaake04g291900
Translocation Chr4 34898460 Chr1 36314703 OsKitaake04g291900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5138709	T-A	Hetero	INTERGENIC
SBS	Chr1	6995596	T-C	Homo	INTERGENIC
SBS	Chr1	18190404	C-T	Hetero	INTERGENIC
SBS	Chr1	37002216	G-C	Hetero	INTERGENIC
SBS	Chr2	2919659	G-A	Homo	INTERGENIC
SBS	Chr2	2919771	G-A	Homo	INTERGENIC
SBS	Chr2	2919772	G-A	Homo	INTERGENIC
SBS	Chr2	2919773	T-A	Homo	INTERGENIC
SBS	Chr3	1399332	A-C	Hetero	INTRON
SBS	Chr3	4378758	C-A	Hetero	INTERGENIC
SBS	Chr3	33182969	C-T	Hetero	INTERGENIC
SBS	Chr4	12827018	A-C	Homo	INTERGENIC
SBS	Chr4	14021522	G-C	Hetero	INTERGENIC
SBS	Chr6	8903174	G-C	Hetero	UTR_3_PRIME
SBS	Chr6	10318676	A-G	Hetero	INTERGENIC
SBS	Chr6	17779309	G-A	Hetero	INTERGENIC
SBS	Chr6	28228013	C-T	Homo	INTERGENIC
SBS	Chr7	6487459	G-A	Hetero	INTERGENIC
SBS	Chr7	9421745	T-A	Hetero	INTERGENIC
SBS	Chr7	26473742	G-C	Hetero	INTRON
SBS	Chr7	26527714	T-G	Homo	INTERGENIC
SBS	Chr7	27225082	G-A	Homo	INTERGENIC
SBS	Chr7	27225087	A-C	Homo	INTERGENIC
SBS	Chr8	2136735	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	9233792	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g084200
SBS	Chr8	26165994	T-G	Homo	INTRON
SBS	Chr9	316037	T-A	Hetero	INTERGENIC
SBS	Chr9	2308701	C-T	Homo	INTERGENIC
SBS	Chr9	9882153	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g060000
SBS	Chr9	15389707	G-A	Homo	INTERGENIC
SBS	Chr10	20440130	G-T	Hetero	INTERGENIC
SBS	Chr11	20438245	C-A	Homo	INTERGENIC
SBS	Chr12	5411934	G-A	Hetero	INTERGENIC
SBS	Chr12	11772279	C-T	Hetero	INTERGENIC
SBS	Chr12	19275166	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g144200
SBS	Chr12	21636950	T-C	Hetero	INTRON
SBS	Chr12	22565659	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	5695882	5695886	4
Deletion	Chr11	7473084	7473085	1
Deletion	Chr6	8922783	8922789	6
Deletion	Chr1	15313001	15398000	84999	9
Deletion	Chr1	17183686	17183851	165
Deletion	Chr7	17803610	17803684	74
Deletion	Chr3	18915995	18915996	1
Deletion	Chr9	20930643	20930655	12	OsKitaake09g178900
Deletion	Chr11	24874394	24874408	14
Deletion	Chr7	28830789	28830796	7
Deletion	Chr1	29559642	29559643	1	OsKitaake01g289800
Deletion	Chr1	37494015	37494017	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14583461	14599869
Inversion	Chr7	14583462	14599869

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes