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Mutant Information

Mutant Name	FN-353 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-353 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7694331 C-T Homo INTERGENIC
SBS Chr1 17728593 C-T Hetero INTERGENIC
SBS Chr1 23335347 C-A Hetero INTERGENIC
SBS Chr1 36027504 G-A Hetero INTERGENIC
SBS Chr1 36158899 C-A Hetero INTERGENIC
SBS Chr1 37611903 C-T Hetero INTERGENIC
SBS Chr2 19201709 G-T Hetero INTERGENIC
SBS Chr2 19463590 G-A Hetero INTERGENIC
SBS Chr2 21376620 A-G Hetero UTR_3_PRIME
SBS Chr2 22889292 C-A Hetero INTERGENIC
SBS Chr2 22889295 A-T Hetero INTERGENIC
SBS Chr2 22890181 G-A Hetero INTERGENIC
SBS Chr2 22890183 G-A Hetero INTERGENIC
SBS Chr2 24825328 G-A Hetero INTERGENIC
SBS Chr3 14155424 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g184850
SBS Chr3 23720019 T-G Hetero INTRON
SBS Chr3 24684370 G-A Hetero INTRON
SBS Chr3 27844569 A-G Hetero INTERGENIC
SBS Chr4 381380 A-G Hetero UTR_3_PRIME
SBS Chr4 6880578 A-T Hetero INTERGENIC
SBS Chr4 8985162 C-T Hetero INTRON
SBS Chr5 1012846 C-A Hetero INTRON
SBS Chr5 13851697 C-T Hetero INTERGENIC
SBS Chr5 17261854 A-T Homo INTERGENIC
SBS Chr5 19007268 C-T Hetero INTRON
SBS Chr5 19079809 G-A Hetero INTERGENIC
SBS Chr6 883663 T-C Hetero INTERGENIC
SBS Chr6 10675861 C-T Homo INTERGENIC
SBS Chr6 10876070 A-T Hetero INTERGENIC
SBS Chr6 11312519 A-T Homo INTERGENIC
SBS Chr7 20381688 A-G Hetero SYNONYMOUS_CODING
SBS Chr8 17927886 G-A Hetero INTERGENIC
SBS Chr9 16606135 C-G Hetero INTERGENIC
SBS Chr10 1809358 A-G Homo INTERGENIC
SBS Chr10 2182936 A-G Hetero INTERGENIC
SBS Chr11 12574160 G-A Homo INTERGENIC
SBS Chr11 16887690 G-A Homo INTERGENIC
SBS Chr11 22098897 T-G Hetero UTR_3_PRIME
SBS Chr11 25512243 T-C Hetero INTERGENIC
SBS Chr12 3274471 C-T Hetero INTRON
SBS Chr12 5115952 T-A Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 91246 91247 1
Deletion Chr4 1096542 1096548 6
Deletion Chr5 5155001 5184000 28999 4
Deletion Chr5 7484641 7484655 14
Deletion Chr11 11838609 11838610 1
Deletion Chr11 13622014 13622021 7
Deletion Chr11 15454052 15454053 1
Deletion Chr10 18036001 18229000 192999 19
Deletion Chr8 20061839 20061844 5
Deletion Chr12 23041986 23041987 1
Deletion Chr5 26106527 26106528 1 OsKitaake05g230500
Deletion Chr1 42416331 42416339 8 OsKitaake01g467200

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11386 11456 69

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7694331	C-T	Homo	INTERGENIC
SBS	Chr1	17728593	C-T	Hetero	INTERGENIC
SBS	Chr1	23335347	C-A	Hetero	INTERGENIC
SBS	Chr1	36027504	G-A	Hetero	INTERGENIC
SBS	Chr1	36158899	C-A	Hetero	INTERGENIC
SBS	Chr1	37611903	C-T	Hetero	INTERGENIC
SBS	Chr2	19201709	G-T	Hetero	INTERGENIC
SBS	Chr2	19463590	G-A	Hetero	INTERGENIC
SBS	Chr2	21376620	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	22889292	C-A	Hetero	INTERGENIC
SBS	Chr2	22889295	A-T	Hetero	INTERGENIC
SBS	Chr2	22890181	G-A	Hetero	INTERGENIC
SBS	Chr2	22890183	G-A	Hetero	INTERGENIC
SBS	Chr2	24825328	G-A	Hetero	INTERGENIC
SBS	Chr3	14155424	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g184850
SBS	Chr3	23720019	T-G	Hetero	INTRON
SBS	Chr3	24684370	G-A	Hetero	INTRON
SBS	Chr3	27844569	A-G	Hetero	INTERGENIC
SBS	Chr4	381380	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	6880578	A-T	Hetero	INTERGENIC
SBS	Chr4	8985162	C-T	Hetero	INTRON
SBS	Chr5	1012846	C-A	Hetero	INTRON
SBS	Chr5	13851697	C-T	Hetero	INTERGENIC
SBS	Chr5	17261854	A-T	Homo	INTERGENIC
SBS	Chr5	19007268	C-T	Hetero	INTRON
SBS	Chr5	19079809	G-A	Hetero	INTERGENIC
SBS	Chr6	883663	T-C	Hetero	INTERGENIC
SBS	Chr6	10675861	C-T	Homo	INTERGENIC
SBS	Chr6	10876070	A-T	Hetero	INTERGENIC
SBS	Chr6	11312519	A-T	Homo	INTERGENIC
SBS	Chr7	20381688	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	17927886	G-A	Hetero	INTERGENIC
SBS	Chr9	16606135	C-G	Hetero	INTERGENIC
SBS	Chr10	1809358	A-G	Homo	INTERGENIC
SBS	Chr10	2182936	A-G	Hetero	INTERGENIC
SBS	Chr11	12574160	G-A	Homo	INTERGENIC
SBS	Chr11	16887690	G-A	Homo	INTERGENIC
SBS	Chr11	22098897	T-G	Hetero	UTR_3_PRIME
SBS	Chr11	25512243	T-C	Hetero	INTERGENIC
SBS	Chr12	3274471	C-T	Hetero	INTRON
SBS	Chr12	5115952	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	91246	91247	1
Deletion	Chr4	1096542	1096548	6
Deletion	Chr5	5155001	5184000	28999	4
Deletion	Chr5	7484641	7484655	14
Deletion	Chr11	11838609	11838610	1
Deletion	Chr11	13622014	13622021	7
Deletion	Chr11	15454052	15454053	1
Deletion	Chr10	18036001	18229000	192999	19
Deletion	Chr8	20061839	20061844	5
Deletion	Chr12	23041986	23041987	1
Deletion	Chr5	26106527	26106528	1	OsKitaake05g230500
Deletion	Chr1	42416331	42416339	8	OsKitaake01g467200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes