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Mutant Information

Mutant Name	FN-356 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-356 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24479956 G-T Hetero INTERGENIC
SBS Chr1 30864976 G-T Homo INTERGENIC
SBS Chr1 35997787 G-C Homo INTERGENIC
SBS Chr1 36982805 A-T Hetero INTERGENIC
SBS Chr2 9810176 G-A Hetero INTERGENIC
SBS Chr2 20885481 C-G Hetero SYNONYMOUS_CODING
SBS Chr3 9383867 A-T Hetero INTERGENIC
SBS Chr3 11656210 G-T Hetero INTRON
SBS Chr3 15503467 T-A Hetero INTERGENIC
SBS Chr3 25821838 A-G Hetero INTRON
SBS Chr4 11229170 T-C Hetero INTERGENIC
SBS Chr5 17486522 C-T Hetero UTR_3_PRIME
SBS Chr5 23430972 A-T Hetero INTERGENIC
SBS Chr5 25924696 A-G Hetero INTERGENIC
SBS Chr5 28638428 G-T Hetero INTERGENIC
SBS Chr6 7962025 G-C Homo INTERGENIC
SBS Chr6 10897758 T-G Homo NON_SYNONYMOUS_CODING OsKitaake06g121400
SBS Chr6 28012337 G-A Hetero INTERGENIC
SBS Chr6 28039167 A-G Hetero INTERGENIC
SBS Chr6 28044491 G-C Hetero INTERGENIC
SBS Chr7 12075419 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g109500
SBS Chr7 14703874 T-A Homo INTERGENIC
SBS Chr8 13415003 C-T Hetero INTERGENIC
SBS Chr10 10377441 C-T Hetero INTERGENIC
SBS Chr10 10667302 C-T Hetero INTERGENIC
SBS Chr10 14325027 G-A Hetero INTERGENIC
SBS Chr11 15623989 C-T Hetero INTERGENIC
SBS Chr11 21716090 G-A Hetero INTERGENIC
SBS Chr12 780087 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 780092 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g010900
SBS Chr12 24041122 G-A Homo INTERGENIC
SBS Chr12 24041123 C-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2157131 2157143 12
Deletion Chr11 2514015 2514031 16
Deletion Chr8 7261828 7261836 8
Deletion Chr12 12954558 12954568 10
Deletion Chr7 15236979 15236981 2
Deletion Chr12 16708283 16708291 8
Deletion Chr2 17105626 17105736 110
Deletion Chr10 18343839 18343842 3
Deletion Chr7 19586198 19586203 5 OsKitaake07g159100
Deletion Chr7 21607001 21624000 16999 2
Deletion Chr1 40236002 40236009 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1349687 1349690 2
Insertion Chr6 24846096 24846099 2
Insertion Chr8 28456327 28456330 2
Insertion Chr10 20132381 20132384 2
Insertion Chr12 11658594 11658596 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 22774724 23445442
Inversion Chr5 22774745 23445442

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 16033196 Chr2 9995144 2
Translocation Chr8 20227087 Chr5 3609829 OsKitaake08g149000
Translocation Chr8 20227092 Chr5 3609337 OsKitaake08g149000
Translocation Chr7 21624524 Chr5 21891394
Translocation Chr5 21895436 Chr3 14561137 OsKitaake03g189600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24479956	G-T	Hetero	INTERGENIC
SBS	Chr1	30864976	G-T	Homo	INTERGENIC
SBS	Chr1	35997787	G-C	Homo	INTERGENIC
SBS	Chr1	36982805	A-T	Hetero	INTERGENIC
SBS	Chr2	9810176	G-A	Hetero	INTERGENIC
SBS	Chr2	20885481	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	9383867	A-T	Hetero	INTERGENIC
SBS	Chr3	11656210	G-T	Hetero	INTRON
SBS	Chr3	15503467	T-A	Hetero	INTERGENIC
SBS	Chr3	25821838	A-G	Hetero	INTRON
SBS	Chr4	11229170	T-C	Hetero	INTERGENIC
SBS	Chr5	17486522	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	23430972	A-T	Hetero	INTERGENIC
SBS	Chr5	25924696	A-G	Hetero	INTERGENIC
SBS	Chr5	28638428	G-T	Hetero	INTERGENIC
SBS	Chr6	7962025	G-C	Homo	INTERGENIC
SBS	Chr6	10897758	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g121400
SBS	Chr6	28012337	G-A	Hetero	INTERGENIC
SBS	Chr6	28039167	A-G	Hetero	INTERGENIC
SBS	Chr6	28044491	G-C	Hetero	INTERGENIC
SBS	Chr7	12075419	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g109500
SBS	Chr7	14703874	T-A	Homo	INTERGENIC
SBS	Chr8	13415003	C-T	Hetero	INTERGENIC
SBS	Chr10	10377441	C-T	Hetero	INTERGENIC
SBS	Chr10	10667302	C-T	Hetero	INTERGENIC
SBS	Chr10	14325027	G-A	Hetero	INTERGENIC
SBS	Chr11	15623989	C-T	Hetero	INTERGENIC
SBS	Chr11	21716090	G-A	Hetero	INTERGENIC
SBS	Chr12	780087	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	780092	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g010900
SBS	Chr12	24041122	G-A	Homo	INTERGENIC
SBS	Chr12	24041123	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2157131	2157143	12
Deletion	Chr11	2514015	2514031	16
Deletion	Chr8	7261828	7261836	8
Deletion	Chr12	12954558	12954568	10
Deletion	Chr7	15236979	15236981	2
Deletion	Chr12	16708283	16708291	8
Deletion	Chr2	17105626	17105736	110
Deletion	Chr10	18343839	18343842	3
Deletion	Chr7	19586198	19586203	5	OsKitaake07g159100
Deletion	Chr7	21607001	21624000	16999	2
Deletion	Chr1	40236002	40236009	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	22774724	23445442
Inversion	Chr5	22774745	23445442

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes