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Mutant Information

Mutant Name	FN-359 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-359 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7136650 G-A Homo INTERGENIC
SBS Chr1 32480983 T-C Homo INTERGENIC
SBS Chr1 41920349 T-G Hetero INTERGENIC
SBS Chr2 3191486 G-C Hetero INTERGENIC
SBS Chr2 16852655 A-C Hetero INTERGENIC
SBS Chr3 26070175 A-G Hetero INTERGENIC
SBS Chr4 21805622 G-A Hetero INTERGENIC
SBS Chr4 31351119 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g245700
SBS Chr5 26128949 T-C Hetero INTRON
SBS Chr7 4306310 G-A Homo INTERGENIC
SBS Chr8 1149102 G-A Hetero INTERGENIC
SBS Chr8 14434193 G-A Hetero INTERGENIC
SBS Chr8 18852877 G-A Hetero INTERGENIC
SBS Chr9 9585554 C-A Hetero INTERGENIC
SBS Chr9 11873408 G-A Hetero INTERGENIC
SBS Chr9 11873409 C-A Hetero INTERGENIC
SBS Chr10 7643543 C-T Hetero INTERGENIC
SBS Chr11 8601195 G-A Hetero INTERGENIC
SBS Chr11 9877993 A-C Hetero INTERGENIC
SBS Chr11 13081272 C-A Hetero INTERGENIC
SBS Chr11 13344985 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1391700 1391706 6
Deletion Chr10 3507018 3507024 6
Deletion Chr7 4360929 4360938 9
Deletion Chr4 4418874 4418878 4
Deletion Chr10 5557425 5557430 5
Deletion Chr4 8484290 8484291 1
Deletion Chr12 11954103 11954110 7
Deletion Chr3 12142639 12142640 1
Deletion Chr4 13395699 13395702 3
Deletion Chr9 14841793 14841795 2
Deletion Chr11 15322276 15322289 13
Deletion Chr2 28638293 28638300 7
Deletion Chr4 34303001 34326000 22999 OsKitaake04g285000

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 424460 424463 2
Insertion Chr4 31599902 31599905 2
Insertion Chr5 6599818 6599821 2
Insertion Chr2 13778278 13778280 1
Insertion Chr2 13854529 13854531 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 11864576 Chr1 3214600
Translocation Chr9 11877549 Chr1 3214538

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7136650	G-A	Homo	INTERGENIC
SBS	Chr1	32480983	T-C	Homo	INTERGENIC
SBS	Chr1	41920349	T-G	Hetero	INTERGENIC
SBS	Chr2	3191486	G-C	Hetero	INTERGENIC
SBS	Chr2	16852655	A-C	Hetero	INTERGENIC
SBS	Chr3	26070175	A-G	Hetero	INTERGENIC
SBS	Chr4	21805622	G-A	Hetero	INTERGENIC
SBS	Chr4	31351119	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g245700
SBS	Chr5	26128949	T-C	Hetero	INTRON
SBS	Chr7	4306310	G-A	Homo	INTERGENIC
SBS	Chr8	1149102	G-A	Hetero	INTERGENIC
SBS	Chr8	14434193	G-A	Hetero	INTERGENIC
SBS	Chr8	18852877	G-A	Hetero	INTERGENIC
SBS	Chr9	9585554	C-A	Hetero	INTERGENIC
SBS	Chr9	11873408	G-A	Hetero	INTERGENIC
SBS	Chr9	11873409	C-A	Hetero	INTERGENIC
SBS	Chr10	7643543	C-T	Hetero	INTERGENIC
SBS	Chr11	8601195	G-A	Hetero	INTERGENIC
SBS	Chr11	9877993	A-C	Hetero	INTERGENIC
SBS	Chr11	13081272	C-A	Hetero	INTERGENIC
SBS	Chr11	13344985	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1391700	1391706	6
Deletion	Chr10	3507018	3507024	6
Deletion	Chr7	4360929	4360938	9
Deletion	Chr4	4418874	4418878	4
Deletion	Chr10	5557425	5557430	5
Deletion	Chr4	8484290	8484291	1
Deletion	Chr12	11954103	11954110	7
Deletion	Chr3	12142639	12142640	1
Deletion	Chr4	13395699	13395702	3
Deletion	Chr9	14841793	14841795	2
Deletion	Chr11	15322276	15322289	13
Deletion	Chr2	28638293	28638300	7
Deletion	Chr4	34303001	34326000	22999	OsKitaake04g285000

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	11864576	Chr1	3214600
Translocation	Chr9	11877549	Chr1	3214538

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes