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Mutant Information

Mutant Name	FN-36 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-36 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31997999 G-A Hetero INTERGENIC
SBS Chr1 38813882 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g415800
SBS Chr2 6532571 T-G Homo INTRON
SBS Chr2 26595150 A-C Hetero INTERGENIC
SBS Chr2 30643117 C-T Hetero INTRON
SBS Chr2 33022980 C-G Hetero INTERGENIC
SBS Chr3 4623457 T-A Hetero INTRON
SBS Chr3 30522397 C-A Homo INTERGENIC
SBS Chr4 5221741 T-A Hetero INTERGENIC
SBS Chr4 6214095 C-T Hetero INTERGENIC
SBS Chr4 21736300 G-T Homo INTERGENIC
SBS Chr4 24624902 C-T Hetero INTERGENIC
SBS Chr5 29616736 T-C Homo SYNONYMOUS_CODING
SBS Chr6 22604049 C-T Hetero INTERGENIC
SBS Chr7 5454984 G-A Hetero INTRON
SBS Chr7 5454985 C-T Hetero INTRON
SBS Chr7 21171145 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g175200
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 25460289 C-A Homo INTERGENIC
SBS Chr7 25460290 C-A Homo INTERGENIC
SBS Chr7 26229232 T-A Homo INTRON
SBS Chr8 20465279 T-A Homo INTERGENIC
SBS Chr9 4791083 C-T Homo INTERGENIC
SBS Chr9 6360763 C-G Hetero INTERGENIC
SBS Chr9 12230371 G-A Homo INTERGENIC
SBS Chr9 12537247 A-G Homo INTERGENIC
SBS Chr10 12823341 C-T Homo INTERGENIC
SBS Chr11 10543443 T-A Hetero INTERGENIC
SBS Chr11 26136515 C-T Hetero INTERGENIC
SBS Chr12 5303211 G-A Hetero INTERGENIC
SBS Chr12 6927982 C-T Hetero INTERGENIC
SBS Chr12 11391573 A-G Hetero INTERGENIC
SBS Chr12 15617651 T-G Homo INTERGENIC
SBS Chr12 18758766 C-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1291801 1291807 6
Deletion Chr9 1318623 1318627 4
Deletion Chr6 4110001 4165000 54999 4
Deletion Chr11 9178154 9178452 298 OsKitaake11g096850
Deletion Chr9 10973526 10973536 10
Deletion Chr1 11015393 11015395 2
Deletion Chr10 11278867 11278878 11
Deletion Chr1 14953597 14953598 1
Deletion Chr4 16166455 16166460 5
Deletion Chr6 16281594 16281595 1
Deletion Chr9 17243423 17243435 12 OsKitaake09g129500
Deletion Chr2 20681057 20681124 67
Deletion Chr1 43085700 43085706 6
Deletion Chr1 43266537 43266542 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 6742311 6742313 1
Insertion Chr5 30236466 30236474 7

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 4113046 Chr3 10617040 OsKitaake06g057600
Translocation Chr6 4162814 Chr3 10617041 OsKitaake06g057800
Translocation Chr11 6916441 Chr6 5683057
Translocation Chr10 8881474 Chr5 29584164 OsKitaake05g281600
Translocation Chr10 8886690 Chr5 29584160 OsKitaake05g281600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31997999	G-A	Hetero	INTERGENIC
SBS	Chr1	38813882	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g415800
SBS	Chr2	6532571	T-G	Homo	INTRON
SBS	Chr2	26595150	A-C	Hetero	INTERGENIC
SBS	Chr2	30643117	C-T	Hetero	INTRON
SBS	Chr2	33022980	C-G	Hetero	INTERGENIC
SBS	Chr3	4623457	T-A	Hetero	INTRON
SBS	Chr3	30522397	C-A	Homo	INTERGENIC
SBS	Chr4	5221741	T-A	Hetero	INTERGENIC
SBS	Chr4	6214095	C-T	Hetero	INTERGENIC
SBS	Chr4	21736300	G-T	Homo	INTERGENIC
SBS	Chr4	24624902	C-T	Hetero	INTERGENIC
SBS	Chr5	29616736	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr6	22604049	C-T	Hetero	INTERGENIC
SBS	Chr7	5454984	G-A	Hetero	INTRON
SBS	Chr7	5454985	C-T	Hetero	INTRON
SBS	Chr7	21171145	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g175200
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	25460289	C-A	Homo	INTERGENIC
SBS	Chr7	25460290	C-A	Homo	INTERGENIC
SBS	Chr7	26229232	T-A	Homo	INTRON
SBS	Chr8	20465279	T-A	Homo	INTERGENIC
SBS	Chr9	4791083	C-T	Homo	INTERGENIC
SBS	Chr9	6360763	C-G	Hetero	INTERGENIC
SBS	Chr9	12230371	G-A	Homo	INTERGENIC
SBS	Chr9	12537247	A-G	Homo	INTERGENIC
SBS	Chr10	12823341	C-T	Homo	INTERGENIC
SBS	Chr11	10543443	T-A	Hetero	INTERGENIC
SBS	Chr11	26136515	C-T	Hetero	INTERGENIC
SBS	Chr12	5303211	G-A	Hetero	INTERGENIC
SBS	Chr12	6927982	C-T	Hetero	INTERGENIC
SBS	Chr12	11391573	A-G	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Homo	INTERGENIC
SBS	Chr12	18758766	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1291801	1291807	6
Deletion	Chr9	1318623	1318627	4
Deletion	Chr6	4110001	4165000	54999	4
Deletion	Chr11	9178154	9178452	298	OsKitaake11g096850
Deletion	Chr9	10973526	10973536	10
Deletion	Chr1	11015393	11015395	2
Deletion	Chr10	11278867	11278878	11
Deletion	Chr1	14953597	14953598	1
Deletion	Chr4	16166455	16166460	5
Deletion	Chr6	16281594	16281595	1
Deletion	Chr9	17243423	17243435	12	OsKitaake09g129500
Deletion	Chr2	20681057	20681124	67
Deletion	Chr1	43085700	43085706	6
Deletion	Chr1	43266537	43266542	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	4113046	Chr3	10617040	OsKitaake06g057600
Translocation	Chr6	4162814	Chr3	10617041	OsKitaake06g057800
Translocation	Chr11	6916441	Chr6	5683057
Translocation	Chr10	8881474	Chr5	29584164	OsKitaake05g281600
Translocation	Chr10	8886690	Chr5	29584160	OsKitaake05g281600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes