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Mutant Information

Mutant Name	FN-361 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-361 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13887009	G-C	Hetero	INTERGENIC
SBS	Chr1	28926420	G-A	Homo	INTERGENIC
SBS	Chr1	36529693	G-T	Hetero	INTERGENIC
SBS	Chr2	21493031	C-T	Homo	INTERGENIC
SBS	Chr3	18078790	C-T	Homo	INTERGENIC
SBS	Chr3	19143413	A-T	Homo	INTERGENIC
SBS	Chr3	28147618	T-A	Hetero	INTERGENIC
SBS	Chr4	10975304	C-T	Hetero	INTERGENIC
SBS	Chr4	28150913	T-A	Hetero	INTERGENIC
SBS	Chr5	1694304	T-A	Homo	INTERGENIC
SBS	Chr5	19002792	T-C	Hetero	INTERGENIC
SBS	Chr5	28436555	C-G	Hetero	INTERGENIC
SBS	Chr6	2129272	T-A	Homo	INTRON
SBS	Chr6	6329035	T-A	Homo	INTERGENIC
SBS	Chr6	10280607	C-T	Hetero	INTERGENIC
SBS	Chr6	13591017	C-T	Homo	INTERGENIC
SBS	Chr6	14880971	A-T	Hetero	INTERGENIC
SBS	Chr6	24453837	A-G	Hetero	INTERGENIC
SBS	Chr7	15778592	T-G	Homo	INTERGENIC
SBS	Chr7	19615439	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g159600
SBS	Chr8	3987671	A-T	Hetero	INTERGENIC
SBS	Chr8	5686141	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g062300
SBS	Chr10	12934959	T-C	Hetero	INTERGENIC
SBS	Chr10	13526213	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	23779878	C-T	Homo	INTERGENIC
SBS	Chr11	13871198	T-A	Hetero	INTERGENIC
SBS	Chr11	13871199	C-A	Hetero	INTERGENIC
SBS	Chr12	3907337	G-A	Homo	INTERGENIC
SBS	Chr12	13163374	A-T	Hetero	INTRON
SBS	Chr12	13941667	A-C	Hetero	INTERGENIC
SBS	Chr12	21764430	T-C	Homo	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	643044	643054	10
Deletion	Chr6	2141741	2141747	6
Deletion	Chr1	3889123	3889141	18
Deletion	Chr8	4866768	4866772	4
Deletion	Chr2	5529942	5529954	12
Deletion	Chr9	12142568	12142571	3
Deletion	Chr11	12666457	12666458	1
Deletion	Chr12	13698737	13698740	3	OsKitaake12g112900
Deletion	Chr12	14754034	14754036	2
Deletion	Chr7	15325045	15325046	1
Deletion	Chr7	17631001	17642000	10999	OsKitaake07g143100
Deletion	Chr7	18654001	18981000	326999	29
Deletion	Chr3	19018990	19018992	2
Deletion	Chr6	21271616	21271617	1	OsKitaake06g188500
Deletion	Chr6	21807001	21891000	83999	4
Deletion	Chr5	23354790	23354798	8
Deletion	Chr3	32609559	32609563	4
Deletion	Chr4	35569625	35569634	9

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	27872045	27872048	2
Insertion	Chr5	30228616	30228624	7

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	18656796	19588362	OsKitaake07g159200
Inversion	Chr7	19038401	19588371	OsKitaake07g159200

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	16752266	Chr4	33795910	OsKitaake04g281100
Translocation	Chr6	16752274	Chr4	33796718	OsKitaake04g281100
Translocation	Chr7	17639925	Chr2	13846438	OsKitaake07g143100
Translocation	Chr8	27946735	Chr4	33796732	2
Translocation	Chr8	27946738	Chr4	33854504	OsKitaake08g234100