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Mutant Information

Mutant Name	FN-363 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-363 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8480457 T-A Hetero INTERGENIC
SBS Chr1 29278022 T-G Hetero INTERGENIC
SBS Chr1 42052274 C-A Hetero INTRON
SBS Chr2 6014960 C-T Hetero INTRON
SBS Chr2 11948203 A-T Hetero INTERGENIC
SBS Chr2 15789614 A-C Hetero INTERGENIC
SBS Chr3 2015000 A-G Hetero INTERGENIC
SBS Chr3 5526976 G-T Hetero INTRON
SBS Chr3 14153604 G-A Hetero INTERGENIC
SBS Chr3 33382263 T-C Hetero INTRON
SBS Chr4 731852 G-A Hetero INTERGENIC
SBS Chr4 3009158 C-T Hetero INTERGENIC
SBS Chr4 7898200 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g040900
SBS Chr4 8501743 G-A Hetero INTERGENIC
SBS Chr4 8905546 G-C Hetero INTERGENIC
SBS Chr4 16761940 A-C Homo INTRON
SBS Chr4 18431348 G-A Homo INTERGENIC
SBS Chr4 19176094 A-G Hetero INTERGENIC
SBS Chr4 28179576 C-T Hetero INTERGENIC
SBS Chr4 34120703 C-T Homo INTERGENIC
SBS Chr5 1732046 T-A Hetero INTRON
SBS Chr5 19902343 G-A Homo INTERGENIC
SBS Chr5 19902352 G-C Homo INTERGENIC
SBS Chr6 1331587 G-A Hetero INTERGENIC
SBS Chr6 10370248 C-T Hetero INTERGENIC
SBS Chr7 3983149 G-A Hetero INTERGENIC
SBS Chr7 8649029 C-T Hetero INTERGENIC
SBS Chr7 15639098 C-G Hetero INTERGENIC
SBS Chr8 11969575 A-G Hetero INTRON
SBS Chr8 15461644 G-T Hetero INTERGENIC
SBS Chr8 23794010 T-C Hetero INTERGENIC
SBS Chr9 7796051 C-T Homo INTERGENIC
SBS Chr10 5749739 T-C Hetero INTERGENIC
SBS Chr11 5183332 G-C Homo INTERGENIC
SBS Chr11 5183338 G-A Homo INTERGENIC
SBS Chr11 9173987 T-A Homo INTERGENIC
SBS Chr12 6513534 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g074900
SBS Chr12 6513905 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g074900
SBS Chr12 9983678 C-A Hetero INTERGENIC
SBS Chr12 15908582 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 778001 853000 74999 10
Deletion Chr4 1143761 1143765 4
Deletion Chr3 2180485 2180486 1
Deletion Chr9 5114288 5114434 146
Deletion Chr11 5183385 5183387 2
Deletion Chr11 5194001 5224000 29999 5
Deletion Chr7 12340679 12340680 1
Deletion Chr1 24608358 24608359 1
Deletion Chr8 25826765 25826772 7
Deletion Chr3 26176201 26176209 8
Deletion Chr5 28152067 28152068 1 OsKitaake05g260400
Deletion Chr3 34863846 34863847 1
Deletion Chr1 36538429 36538439 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 9836773 9836778 4
Insertion Chr5 30226856 30226864 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 1416357 2259150
Inversion Chr7 8708850 8863163

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 851698 Chr3 25448500 OsKitaake07g010500
Translocation Chr11 3417370 Chr7 8411469 OsKitaake07g091200
Translocation Chr12 6515540 Chr11 3418936
Translocation Chr12 6516056 Chr7 8413147 OsKitaake07g091200
Translocation Chr12 6516095 Chr6 14601266
Translocation Chr7 8708851 Chr3 14119856
Translocation Chr7 8709198 Chr3 25448501

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8480457	T-A	Hetero	INTERGENIC
SBS	Chr1	29278022	T-G	Hetero	INTERGENIC
SBS	Chr1	42052274	C-A	Hetero	INTRON
SBS	Chr2	6014960	C-T	Hetero	INTRON
SBS	Chr2	11948203	A-T	Hetero	INTERGENIC
SBS	Chr2	15789614	A-C	Hetero	INTERGENIC
SBS	Chr3	2015000	A-G	Hetero	INTERGENIC
SBS	Chr3	5526976	G-T	Hetero	INTRON
SBS	Chr3	14153604	G-A	Hetero	INTERGENIC
SBS	Chr3	33382263	T-C	Hetero	INTRON
SBS	Chr4	731852	G-A	Hetero	INTERGENIC
SBS	Chr4	3009158	C-T	Hetero	INTERGENIC
SBS	Chr4	7898200	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g040900
SBS	Chr4	8501743	G-A	Hetero	INTERGENIC
SBS	Chr4	8905546	G-C	Hetero	INTERGENIC
SBS	Chr4	16761940	A-C	Homo	INTRON
SBS	Chr4	18431348	G-A	Homo	INTERGENIC
SBS	Chr4	19176094	A-G	Hetero	INTERGENIC
SBS	Chr4	28179576	C-T	Hetero	INTERGENIC
SBS	Chr4	34120703	C-T	Homo	INTERGENIC
SBS	Chr5	1732046	T-A	Hetero	INTRON
SBS	Chr5	19902343	G-A	Homo	INTERGENIC
SBS	Chr5	19902352	G-C	Homo	INTERGENIC
SBS	Chr6	1331587	G-A	Hetero	INTERGENIC
SBS	Chr6	10370248	C-T	Hetero	INTERGENIC
SBS	Chr7	3983149	G-A	Hetero	INTERGENIC
SBS	Chr7	8649029	C-T	Hetero	INTERGENIC
SBS	Chr7	15639098	C-G	Hetero	INTERGENIC
SBS	Chr8	11969575	A-G	Hetero	INTRON
SBS	Chr8	15461644	G-T	Hetero	INTERGENIC
SBS	Chr8	23794010	T-C	Hetero	INTERGENIC
SBS	Chr9	7796051	C-T	Homo	INTERGENIC
SBS	Chr10	5749739	T-C	Hetero	INTERGENIC
SBS	Chr11	5183332	G-C	Homo	INTERGENIC
SBS	Chr11	5183338	G-A	Homo	INTERGENIC
SBS	Chr11	9173987	T-A	Homo	INTERGENIC
SBS	Chr12	6513534	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g074900
SBS	Chr12	6513905	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g074900
SBS	Chr12	9983678	C-A	Hetero	INTERGENIC
SBS	Chr12	15908582	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	778001	853000	74999	10
Deletion	Chr4	1143761	1143765	4
Deletion	Chr3	2180485	2180486	1
Deletion	Chr9	5114288	5114434	146
Deletion	Chr11	5183385	5183387	2
Deletion	Chr11	5194001	5224000	29999	5
Deletion	Chr7	12340679	12340680	1
Deletion	Chr1	24608358	24608359	1
Deletion	Chr8	25826765	25826772	7
Deletion	Chr3	26176201	26176209	8
Deletion	Chr5	28152067	28152068	1	OsKitaake05g260400
Deletion	Chr3	34863846	34863847	1
Deletion	Chr1	36538429	36538439	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1416357	2259150
Inversion	Chr7	8708850	8863163

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes