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Mutant Information

Mutant Name	FN-364 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-364 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 37304094 C-T Hetero INTERGENIC
SBS Chr2 16375502 A-G Hetero INTERGENIC
SBS Chr3 20610122 C-T Hetero INTERGENIC
SBS Chr4 4913223 A-G Hetero INTERGENIC
SBS Chr4 17190845 C-G Hetero INTERGENIC
SBS Chr5 1665182 A-G Hetero INTRON
SBS Chr5 8696708 T-A Homo INTERGENIC
SBS Chr5 8696709 T-A Homo INTERGENIC
SBS Chr5 11498579 G-A Homo INTERGENIC
SBS Chr6 29319081 C-T Homo SYNONYMOUS_CODING
SBS Chr7 6288854 G-T Homo INTERGENIC
SBS Chr7 14205515 G-A Homo INTERGENIC
SBS Chr7 28421691 A-T Hetero INTERGENIC
SBS Chr8 3659088 C-T Hetero INTERGENIC
SBS Chr8 16244514 G-A Homo INTERGENIC
SBS Chr10 11926171 C-T Hetero INTERGENIC
SBS Chr10 21249190 C-T Hetero INTERGENIC
SBS Chr11 5074765 T-A Hetero INTRON
SBS Chr11 5074766 C-A Hetero INTRON
SBS Chr12 12707272 T-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1085557 1085565 8
Deletion Chr6 4752175 4752176 1
Deletion Chr7 8127640 8127645 5
Deletion Chr7 8379349 8379353 4
Deletion Chr6 15276727 15276744 17
Deletion Chr5 16268161 16268164 3
Deletion Chr8 18107330 18107331 1
Deletion Chr5 22394370 22394379 9
Deletion Chr3 24851685 24851686 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 14498451 14498454 2
Insertion Chr6 2211286 2211291 4
Insertion Chr6 11200865 11200886 20

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 12881649 13112269
Inversion Chr6 28685461 28913062 OsKitaake06g263900

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 5002934 Chr10 22705974
Translocation Chr11 5002946 Chr10 18123478
Translocation Chr11 5481208 Chr10 22706366 OsKitaake11g067300
Translocation Chr11 5577197 Chr6 28685475 2
Translocation Chr11 5577202 Chr10 18123913 OsKitaake11g068300
Translocation Chr12 22148675 Chr11 5481895 OsKitaake11g067300
Translocation Chr12 22149240 Chr6 28685934 OsKitaake06g263900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37304094	C-T	Hetero	INTERGENIC
SBS	Chr2	16375502	A-G	Hetero	INTERGENIC
SBS	Chr3	20610122	C-T	Hetero	INTERGENIC
SBS	Chr4	4913223	A-G	Hetero	INTERGENIC
SBS	Chr4	17190845	C-G	Hetero	INTERGENIC
SBS	Chr5	1665182	A-G	Hetero	INTRON
SBS	Chr5	8696708	T-A	Homo	INTERGENIC
SBS	Chr5	8696709	T-A	Homo	INTERGENIC
SBS	Chr5	11498579	G-A	Homo	INTERGENIC
SBS	Chr6	29319081	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	6288854	G-T	Homo	INTERGENIC
SBS	Chr7	14205515	G-A	Homo	INTERGENIC
SBS	Chr7	28421691	A-T	Hetero	INTERGENIC
SBS	Chr8	3659088	C-T	Hetero	INTERGENIC
SBS	Chr8	16244514	G-A	Homo	INTERGENIC
SBS	Chr10	11926171	C-T	Hetero	INTERGENIC
SBS	Chr10	21249190	C-T	Hetero	INTERGENIC
SBS	Chr11	5074765	T-A	Hetero	INTRON
SBS	Chr11	5074766	C-A	Hetero	INTRON
SBS	Chr12	12707272	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1085557	1085565	8
Deletion	Chr6	4752175	4752176	1
Deletion	Chr7	8127640	8127645	5
Deletion	Chr7	8379349	8379353	4
Deletion	Chr6	15276727	15276744	17
Deletion	Chr5	16268161	16268164	3
Deletion	Chr8	18107330	18107331	1
Deletion	Chr5	22394370	22394379	9
Deletion	Chr3	24851685	24851686	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	12881649	13112269
Inversion	Chr6	28685461	28913062	OsKitaake06g263900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes