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| Mutant Information |
|---|
| Mutant Name | FN-365 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-365 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11741030 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 29951559 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 22994004 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23725644 | C-G | Homo | INTRON | |
| SBS | Chr4 | 4211886 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 4359058 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 12431114 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24885521 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 27767926 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 27767927 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 2133066 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 22607620 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 29946695 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 29946696 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 8568707 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 12826989 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 13532660 | T-G | Hetero | INTRON | |
| SBS | Chr7 | 15130247 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15130283 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 612949 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 10462377 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 8808705 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g094800 |
| SBS | Chr11 | 16386678 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 1141262 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 5194413 | G-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 2214777 | 2214782 | 5 | OsKitaake03g031800 |
| Deletion | Chr12 | 2710159 | 2710160 | 1 | |
| Deletion | Chr4 | 2835049 | 2835053 | 4 | |
| Deletion | Chr7 | 13071001 | 13316000 | 244999 | 19 |
| Deletion | Chr10 | 15039674 | 15039681 | 7 | |
| Deletion | Chr4 | 17506001 | 17530000 | 23999 | OsKitaake04g087300 |
| Deletion | Chr4 | 17533001 | 17553000 | 19999 | 2 |
| Deletion | Chr9 | 20880919 | 20880932 | 13 | OsKitaake09g178400 |
| Deletion | Chr6 | 24059904 | 24059909 | 5 | |
| Deletion | Chr11 | 26697897 | 26697899 | 2 | |
| Deletion | Chr8 | 29002632 | 29002633 | 1 | |
| Deletion | Chr3 | 29360278 | 29360281 | 3 | |
| Deletion | Chr2 | 37007281 | 37007282 | 1 | OsKitaake02g397100 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 15059003 | 15059006 | 2 | |
| Insertion | Chr4 | 13238148 | 13238150 | 1 | |
| Insertion | Chr5 | 12633210 | 12633212 | 1 | |
| Insertion | Chr5 | 24702636 | 24702640 | 3 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 17440666 | 17506804 | OsKitaake04g086400 |
| Inversion | Chr4 | 17440674 | 17551884 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 3297186 | Chr6 | 1037361 | |
| Translocation | Chr8 | 3297195 | Chr6 | 1037168 |