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| Mutant Information |
|---|
| Mutant Name | FN-366 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-366 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18509898 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31961374 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 34020961 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 35923120 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 449342 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 449343 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15270778 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 31942656 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 32626478 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 654013 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1367121 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6754648 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14418787 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21935350 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23420173 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 5994391 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 28558674 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 10915377 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 20362020 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4548752 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 9802683 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10334141 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 27944515 | G-A | Homo | SYNONYMOUS_CODING |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 584216 | 584218 | 2 | OsKitaake01g114400 |
| Deletion | Chr12 | 2545593 | 2545594 | 1 | |
| Deletion | Chr1 | 4849199 | 4849201 | 2 | |
| Deletion | Chr10 | 6240292 | 6240300 | 8 | |
| Deletion | Chr5 | 6451890 | 6451895 | 5 | |
| Deletion | Chr9 | 11651362 | 11651363 | 1 | |
| Deletion | Chr3 | 13659259 | 13659260 | 1 | |
| Deletion | Chr5 | 19399340 | 19399360 | 20 | |
| Deletion | Chr1 | 24192716 | 24192719 | 3 | |
| Deletion | Chr8 | 24679450 | 24679454 | 4 | |
| Deletion | Chr7 | 25465693 | 25465696 | 3 | |
| Deletion | Chr12 | 26891635 | 26891636 | 1 | |
| Deletion | Chr2 | 29054481 | 29054484 | 3 | |
| Deletion | Chr1 | 36107544 | 36107550 | 6 | OsKitaake01g383200 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 306853 | 306855 | 1 | |
| Insertion | Chr4 | 26602241 | 26602244 | 2 | |
| Insertion | Chr9 | 3057509 | 3057512 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 15264515 | 15272227 | |
| Inversion | Chr3 | 35833960 | 36036235 | 2 |
| Inversion | Chr3 | 35833962 | 36036237 | 2 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 214863 | Chr3 | 31927739 | |
| Translocation | Chr4 | 215438 | Chr3 | 31927754 | |
| Translocation | Chr12 | 4589325 | Chr1 | 28722632 | 2 |
| Translocation | Chr12 | 4589339 | Chr1 | 28723583 | OsKitaake12g060700 |