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| Mutant Information |
|---|
| Mutant Name | FN-368 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-368 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14209926 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18199727 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18199728 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27881390 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31230975 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 10345473 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28159108 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 32354627 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 26601189 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 18172459 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24636665 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 8316640 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 7131343 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 8804913 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 25797852 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13538425 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 20867873 | A-T | Homo | INTRON | |
| SBS | Chr11 | 2526980 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 3999384 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g054800 |
| SBS | Chr11 | 5276471 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15345013 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 16449746 | G-A | Hetero | UTR_3_PRIME |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 2763109 | 2763111 | 2 | |
| Deletion | Chr3 | 3271674 | 3271683 | 9 | |
| Deletion | Chr12 | 7138711 | 7138712 | 1 | OsKitaake12g080000 |
| Deletion | Chr3 | 8078465 | 8078469 | 4 | OsKitaake03g112000 |
| Deletion | Chr9 | 12262365 | 12262370 | 5 | |
| Deletion | Chr9 | 13246164 | 13246171 | 7 | |
| Deletion | Chr3 | 15834246 | 15834248 | 2 | |
| Deletion | Chr3 | 16105096 | 16105098 | 2 | |
| Deletion | Chr8 | 20008409 | 20008411 | 2 | |
| Deletion | Chr4 | 24441203 | 24441205 | 2 | |
| Deletion | Chr3 | 25862452 | 25862453 | 1 | |
| Deletion | Chr2 | 29304666 | 29304669 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 8493493 | 8493496 | 2 | |
| Insertion | Chr3 | 15596263 | 15596266 | 2 | |
| Insertion | Chr4 | 11175662 | 11175664 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 13795994 | 14457722 | OsKitaake06g144000 |
| Inversion | Chr6 | 13796002 | 14457732 | OsKitaake06g144000 |
| Inversion | Chr2 | 21093593 | 21654748 | |
| Inversion | Chr2 | 21093603 | 21654771 | |
| Inversion | Chr2 | 21848998 | 21968924 | OsKitaake02g212400 |
| Inversion | Chr2 | 21849045 | 21968938 | OsKitaake02g212400 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 15499921 | Chr4 | 20044065 | |
| Translocation | Chr12 | 15499928 | Chr8 | 16622142 | |
| Translocation | Chr8 | 16623433 | Chr4 | 20045143 |