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| Mutant Information |
|---|
| Mutant Name | FN-37 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-37 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 36899065 | G-A | Homo | INTRON | |
| SBS | Chr2 | 19649481 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 24498819 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 34490172 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 11610158 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 22475532 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 8533988 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14908611 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28726237 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 29071981 | A-G | Homo | INTRON | |
| SBS | Chr5 | 95978 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 3974088 | T-A | Homo | STOP_GAINED | OsKitaake05g047900 |
| SBS | Chr5 | 3974089 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 11640562 | T-C | Homo | INTRON | |
| SBS | Chr6 | 3516235 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 11071770 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g098900 |
| SBS | Chr8 | 19451184 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19451190 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4437692 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 20175259 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 5538433 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11874457 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16865923 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 21095637 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 22265724 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 22700794 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 11115886 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 15966405 | C-T | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 6193001 | 6232000 | 38999 | 4 |
| Deletion | Chr12 | 6239001 | 6276000 | 36999 | OsKitaake12g072500 |
| Deletion | Chr1 | 10767253 | 10767254 | 1 | |
| Deletion | Chr9 | 12462001 | 12485000 | 22999 | 3 |
| Deletion | Chr11 | 17095813 | 17095820 | 7 | |
| Deletion | Chr6 | 19904511 | 19904513 | 2 | |
| Deletion | Chr5 | 26328017 | 26328019 | 2 | OsKitaake05g232500 |
| Deletion | Chr3 | 26487656 | 26487665 | 9 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 4427109 | 4427111 | 1 | |
| Insertion | Chr12 | 20146354 | 20146356 | 1 | OsKitaake12g154800  |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 6275311 | 6444017 | OsKitaake12g074300 |
| Inversion | Chr8 | 21740735 | 21836646 | OsKitaake08g164400 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 12480635 | Chr8 | 21740728 | 2 |
| Translocation | Chr9 | 12482190 | Chr8 | 21836500 | OsKitaake09g081900 |