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| Mutant Information |
|---|
| Mutant Name | FN-370 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-370 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8527608 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 8527610 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 10657519 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 28844631 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 34634445 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 39256836 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 9885970 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 656684 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 1985004 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 4144425 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 4144426 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14018452 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19322859 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25029947 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 12550058 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 15702080 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16220409 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 1072225 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1072232 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11505022 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11734976 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 15420080 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 3826794 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 13560328 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 26148891 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 26476624 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 26942339 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 26942340 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 4040953 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 8565539 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26581040 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 15885367 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 15885776 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 16184914 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 56400 | T-A | Hetero | INTRON | |
| SBS | Chr10 | 1994906 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 8631822 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 13007893 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 5554393 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 5554394 | C-T | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 4372730 | 4372732 | 2 | |
| Deletion | Chr7 | 4463772 | 4463789 | 17 | OsKitaake07g055900 |
| Deletion | Chr6 | 5420949 | 5420950 | 1 | |
| Deletion | Chr5 | 11717688 | 11717690 | 2 | |
| Deletion | Chr11 | 12463451 | 12463476 | 25 | |
| Deletion | Chr9 | 19132674 | 19132678 | 4 | |
| Deletion | Chr4 | 20269723 | 20269725 | 2 | |
| Deletion | Chr7 | 24098027 | 24098033 | 6 | |
| Deletion | Chr11 | 29382442 | 29382447 | 5 | |
| Deletion | Chr2 | 32030971 | 32030975 | 4 | OsKitaake02g327400 |
| Deletion | Chr3 | 33498106 | 33498107 | 1 | |
| Deletion | Chr3 | 37482872 | 37482883 | 11 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 7410115 | 7410118 | 2 | |
| Insertion | Chr3 | 28558845 | 28558848 | 2 | |
| Insertion | Chr12 | 4249578 | 4249583 | 4 |