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| Mutant Information |
|---|
| Mutant Name | FN-371 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-371 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6571401 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 6960606 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 10239370 | G-A | Homo | INTRON | |
| SBS | Chr2 | 19620694 | C-T | Homo | INTRON | |
| SBS | Chr3 | 7123363 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9647900 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g131400 |
| SBS | Chr3 | 10240938 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8004736 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 20105894 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23305894 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 23406716 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 26755592 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 27691888 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 455737 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26183459 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12131365 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 19505630 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 16692051 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 16106330 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g115500 |
| SBS | Chr10 | 3205604 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 4036382 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14857535 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 7543723 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21045955 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2594829 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17137377 | T-G | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 3357040 | 3357053 | 13 | |
| Deletion | Chr9 | 4628911 | 4629084 | 173 | |
| Deletion | Chr2 | 8004001 | 8130000 | 125999 | 11 |
| Deletion | Chr3 | 9349975 | 9349977 | 2 | |
| Deletion | Chr2 | 10713320 | 10713327 | 7 | |
| Deletion | Chr11 | 12456290 | 12456291 | 1 | |
| Deletion | Chr12 | 13066611 | 13066612 | 1 | |
| Deletion | Chr2 | 15403080 | 15403081 | 1 | |
| Deletion | Chr2 | 15724169 | 15724170 | 1 | |
| Deletion | Chr2 | 18446002 | 18446003 | 1 | |
| Deletion | Chr7 | 21769821 | 21769831 | 10 | OsKitaake07g183000 |
| Deletion | Chr12 | 24698001 | 24770000 | 71999 | 3 |
| Deletion | Chr5 | 26175912 | 26175913 | 1 | |
| Deletion | Chr5 | 27732192 | 27732195 | 3 | OsKitaake05g253600 |
| Deletion | Chr2 | 29632694 | 29632700 | 6 | |
| Deletion | Chr5 | 29741468 | 29741472 | 4 | |
| Deletion | Chr4 | 32044497 | 32044498 | 1 | |
| Deletion | Chr1 | 38204502 | 38204517 | 15 | |
| Deletion | Chr1 | 38741968 | 38741970 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 12955104 | 12955106 | 1 | |
| Insertion | Chr3 | 6885482 | 6885485 | 2 | OsKitaake03g097400  |
| Insertion | Chr5 | 21767326 | 21767332 | 5 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 5698509 | Chr4 | 30437481 | |
| Translocation | Chr5 | 5698625 | Chr4 | 30437484 | |
| Translocation | Chr6 | 19085830 | Chr3 | 19984289 |