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Mutant Information

Mutant Name	FN-372 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-372 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11970341 C-T Homo INTERGENIC
SBS Chr3 2990543 G-A Hetero INTERGENIC
SBS Chr3 10353720 G-C Hetero INTERGENIC
SBS Chr3 16517484 T-G Hetero INTERGENIC
SBS Chr4 32149994 G-A Homo INTERGENIC
SBS Chr4 32324043 T-G Homo INTERGENIC
SBS Chr4 32324044 T-C Homo INTERGENIC
SBS Chr6 3825918 T-G Hetero INTERGENIC
SBS Chr6 28376794 T-A Homo INTRON
SBS Chr7 9674903 A-G Hetero INTERGENIC
SBS Chr7 9683899 G-T Hetero INTERGENIC
SBS Chr7 29039681 C-T Hetero INTERGENIC
SBS Chr9 13617939 C-T Hetero INTERGENIC
SBS Chr9 13617940 A-T Hetero INTERGENIC
SBS Chr10 14745525 T-A Hetero INTERGENIC
SBS Chr11 323427 G-T Hetero INTERGENIC
SBS Chr11 8364997 G-A Homo INTERGENIC
SBS Chr11 12490297 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3635147 3635151 4
Deletion Chr5 8005296 8005300 4
Deletion Chr2 9882864 9882872 8
Deletion Chr11 11370525 11370526 1
Deletion Chr2 12271458 12271460 2
Deletion Chr5 15447051 15447059 8
Deletion Chr2 17672775 17672777 2
Deletion Chr3 20047806 20047961 155
Deletion Chr5 20410189 20410190 1
Deletion Chr11 20856010 20856015 5
Deletion Chr6 25526342 25526343 1
Deletion Chr1 30263893 30263894 1
Deletion Chr4 34231295 34231297 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 21343671 21343674 2
Insertion Chr7 28907917 28907920 2
Insertion Chr6 10871159 10871162 2 OsKitaake06g121250

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 873541 1716386 OsKitaake04g011300

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 20629120 Chr7 21864748 OsKitaake11g161500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11970341	C-T	Homo	INTERGENIC
SBS	Chr3	2990543	G-A	Hetero	INTERGENIC
SBS	Chr3	10353720	G-C	Hetero	INTERGENIC
SBS	Chr3	16517484	T-G	Hetero	INTERGENIC
SBS	Chr4	32149994	G-A	Homo	INTERGENIC
SBS	Chr4	32324043	T-G	Homo	INTERGENIC
SBS	Chr4	32324044	T-C	Homo	INTERGENIC
SBS	Chr6	3825918	T-G	Hetero	INTERGENIC
SBS	Chr6	28376794	T-A	Homo	INTRON
SBS	Chr7	9674903	A-G	Hetero	INTERGENIC
SBS	Chr7	9683899	G-T	Hetero	INTERGENIC
SBS	Chr7	29039681	C-T	Hetero	INTERGENIC
SBS	Chr9	13617939	C-T	Hetero	INTERGENIC
SBS	Chr9	13617940	A-T	Hetero	INTERGENIC
SBS	Chr10	14745525	T-A	Hetero	INTERGENIC
SBS	Chr11	323427	G-T	Hetero	INTERGENIC
SBS	Chr11	8364997	G-A	Homo	INTERGENIC
SBS	Chr11	12490297	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3635147	3635151	4
Deletion	Chr5	8005296	8005300	4
Deletion	Chr2	9882864	9882872	8
Deletion	Chr11	11370525	11370526	1
Deletion	Chr2	12271458	12271460	2
Deletion	Chr5	15447051	15447059	8
Deletion	Chr2	17672775	17672777	2
Deletion	Chr3	20047806	20047961	155
Deletion	Chr5	20410189	20410190	1
Deletion	Chr11	20856010	20856015	5
Deletion	Chr6	25526342	25526343	1
Deletion	Chr1	30263893	30263894	1
Deletion	Chr4	34231295	34231297	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	873541	1716386	OsKitaake04g011300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes