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| Mutant Information |
|---|
| Mutant Name | FN-374 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-374 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 38176621 | A-G | Homo | INTRON | |
| SBS | Chr2 | 10421140 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 27476687 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23470329 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 26079972 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g274700 |
| SBS | Chr3 | 26216475 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 26704206 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 29326300 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 13776261 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24356153 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14099611 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 5600173 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 3503845 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20287368 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 23879361 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 24943052 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 24943053 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 3139708 | A-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 8692026 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 27513704 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 28471743 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 28752779 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14307558 | G-A | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 380932 | 380934 | 2 | OsKitaake01g005200 |
| Deletion | Chr12 | 2349204 | 2349205 | 1 | |
| Deletion | Chr2 | 7834140 | 7834141 | 1 | OsKitaake02g102200 |
| Deletion | Chr1 | 9651060 | 9651061 | 1 | OsKitaake01g123400 |
| Deletion | Chr7 | 9951465 | 9951467 | 2 | |
| Deletion | Chr10 | 10338590 | 10338712 | 122 | |
| Deletion | Chr2 | 11753505 | 11753509 | 4 | |
| Deletion | Chr2 | 12155639 | 12155641 | 2 | |
| Deletion | Chr2 | 12378811 | 12378815 | 4 | |
| Deletion | Chr3 | 12705509 | 12705512 | 3 | |
| Deletion | Chr1 | 16543627 | 16543633 | 6 | |
| Deletion | Chr6 | 17652530 | 17652533 | 3 | |
| Deletion | Chr3 | 20034154 | 20034607 | 453 | |
| Deletion | Chr10 | 20072993 | 20072998 | 5 | |
| Deletion | Chr6 | 28929227 | 28929236 | 9 | |
| Deletion | Chr1 | 29492387 | 29492388 | 1 | OsKitaake01g289000 |
| Deletion | Chr1 | 34647065 | 34647066 | 1 | OsKitaake01g363700 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 13850924 | 13850926 | 1 | |
| Insertion | Chr5 | 30230376 | 30230384 | 7 | |
| Insertion | Chr7 | 11037064 | 11037067 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 3362212 | 3721701 | OsKitaake01g044300 |
| Inversion | Chr1 | 3362216 | 3721704 | OsKitaake01g044300 |
| Inversion | Chr6 | 29177303 | 29365875 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 24970354 | Chr1 | 9977878 | OsKitaake01g126300 |
| Translocation | Chr7 | 24970944 | Chr1 | 9976965 | OsKitaake01g126300 |