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| Mutant Information |
|---|
| Mutant Name | FN-375 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-375 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23306518 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 33573106 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 36035342 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14970931 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 15649181 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 15776942 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 24731115 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 28549073 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 11899512 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g162000 |
| SBS | Chr3 | 21810318 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 8748257 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9419472 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 10801484 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14716936 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17154627 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 30148613 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 763786 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 22258425 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 28021836 | G-C | Hetero | INTRON | |
| SBS | Chr6 | 14912305 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17011219 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 17287692 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 18776249 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 28388300 | G-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 20978465 | C-T | Homo | INTRON | |
| SBS | Chr8 | 2247083 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 12099142 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 305586 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 13041818 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 16344812 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 6637951 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 9385354 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11089068 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25287497 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 29094909 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 18152862 | G-C | Homo | INTRON |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 4376502 | 4376510 | 8 | |
| Deletion | Chr5 | 5914748 | 5914750 | 2 | |
| Deletion | Chr5 | 7032775 | 7032778 | 3 | OsKitaake05g070700 |
| Deletion | Chr7 | 9431001 | 9559000 | 127999 | 9 |
| Deletion | Chr11 | 9511958 | 9511961 | 3 | OsKitaake11g099600 |
| Deletion | Chr8 | 10853660 | 10853662 | 2 | |
| Deletion | Chr2 | 13817486 | 13817651 | 165 | |
| Deletion | Chr9 | 15736912 | 15736920 | 8 | |
| Deletion | Chr2 | 18388889 | 18388890 | 1 | OsKitaake02g182100 |
| Deletion | Chr3 | 20607297 | 20607298 | 1 | |
| Deletion | Chr7 | 27718624 | 27718633 | 9 | |
| Deletion | Chr6 | 29401683 | 29401688 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 14024858 | 14024860 | 1 | |
| Insertion | Chr11 | 2654702 | 2654704 | 1 | |
| Insertion | Chr10 | 11980450 | 11980453 | 2 | |
| Insertion | Chr12 | 15941367 | 15941369 | 1 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 11986361 | Chr2 | 24732311 | 2 |
| Translocation | Chr11 | 11986435 | Chr2 | 24678397 | OsKitaake11g111100 |
| Translocation | Chr5 | 12005027 | Chr2 | 15346843 | |
| Translocation | Chr9 | 18572650 | Chr6 | 15032356 | |
| Translocation | Chr9 | 18572863 | Chr6 | 15032278 |