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Mutant Information

Mutant Name	FN-377 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-377 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 182952 C-T Hetero UTR_3_PRIME
SBS Chr1 4267279 G-A Hetero INTERGENIC
SBS Chr1 4267280 T-A Hetero INTERGENIC
SBS Chr1 5591613 A-G Hetero INTERGENIC
SBS Chr1 6737570 T-A Hetero INTERGENIC
SBS Chr1 16237620 A-T Hetero INTERGENIC
SBS Chr1 16237621 C-T Hetero INTERGENIC
SBS Chr1 18669548 G-A Hetero INTERGENIC
SBS Chr4 16915510 C-T Hetero INTERGENIC
SBS Chr4 24134683 C-A Hetero INTERGENIC
SBS Chr4 24462781 G-T Hetero INTERGENIC
SBS Chr5 8294689 G-T Hetero INTERGENIC
SBS Chr5 18038288 C-T Hetero INTERGENIC
SBS Chr5 25870579 C-T Homo INTERGENIC
SBS Chr5 27915596 G-A Homo INTRON
SBS Chr5 27915597 G-A Homo INTRON
SBS Chr5 28765451 T-A Homo INTRON
SBS Chr6 4144762 T-G Homo INTERGENIC
SBS Chr6 4150836 A-C Homo INTERGENIC
SBS Chr6 4150839 G-A Homo INTERGENIC
SBS Chr6 7585095 C-A Homo INTRON
SBS Chr6 15262861 C-T Hetero INTERGENIC
SBS Chr8 8536523 C-T Hetero INTERGENIC
SBS Chr10 20065821 G-A Hetero INTERGENIC
SBS Chr11 14909976 G-T Hetero INTERGENIC
SBS Chr12 7508752 A-C Hetero INTRON
SBS Chr12 10785451 A-T Hetero INTRON
SBS Chr12 20186650 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2596646 2596648 2
Deletion Chr5 2861963 2861972 9
Deletion Chr6 10019092 10019102 10
Deletion Chr8 25434992 25434999 7
Deletion Chr1 25795937 25795939 2
Deletion Chr1 27960414 27960514 100
Deletion Chr6 28065386 28065391 5
Deletion Chr5 29401543 29401545 2
Deletion Chr4 30930580 30930597 17
Deletion Chr2 32000309 32000316 7

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 14954685 15103481 OsKitaake04g071200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 25715485 Chr5 22818415 OsKitaake12g212500
Translocation Chr12 25715551 Chr5 22818081 OsKitaake12g212500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	182952	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	4267279	G-A	Hetero	INTERGENIC
SBS	Chr1	4267280	T-A	Hetero	INTERGENIC
SBS	Chr1	5591613	A-G	Hetero	INTERGENIC
SBS	Chr1	6737570	T-A	Hetero	INTERGENIC
SBS	Chr1	16237620	A-T	Hetero	INTERGENIC
SBS	Chr1	16237621	C-T	Hetero	INTERGENIC
SBS	Chr1	18669548	G-A	Hetero	INTERGENIC
SBS	Chr4	16915510	C-T	Hetero	INTERGENIC
SBS	Chr4	24134683	C-A	Hetero	INTERGENIC
SBS	Chr4	24462781	G-T	Hetero	INTERGENIC
SBS	Chr5	8294689	G-T	Hetero	INTERGENIC
SBS	Chr5	18038288	C-T	Hetero	INTERGENIC
SBS	Chr5	25870579	C-T	Homo	INTERGENIC
SBS	Chr5	27915596	G-A	Homo	INTRON
SBS	Chr5	27915597	G-A	Homo	INTRON
SBS	Chr5	28765451	T-A	Homo	INTRON
SBS	Chr6	4144762	T-G	Homo	INTERGENIC
SBS	Chr6	4150836	A-C	Homo	INTERGENIC
SBS	Chr6	4150839	G-A	Homo	INTERGENIC
SBS	Chr6	7585095	C-A	Homo	INTRON
SBS	Chr6	15262861	C-T	Hetero	INTERGENIC
SBS	Chr8	8536523	C-T	Hetero	INTERGENIC
SBS	Chr10	20065821	G-A	Hetero	INTERGENIC
SBS	Chr11	14909976	G-T	Hetero	INTERGENIC
SBS	Chr12	7508752	A-C	Hetero	INTRON
SBS	Chr12	10785451	A-T	Hetero	INTRON
SBS	Chr12	20186650	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2596646	2596648	2
Deletion	Chr5	2861963	2861972	9
Deletion	Chr6	10019092	10019102	10
Deletion	Chr8	25434992	25434999	7
Deletion	Chr1	25795937	25795939	2
Deletion	Chr1	27960414	27960514	100
Deletion	Chr6	28065386	28065391	5
Deletion	Chr5	29401543	29401545	2
Deletion	Chr4	30930580	30930597	17
Deletion	Chr2	32000309	32000316	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14954685	15103481	OsKitaake04g071200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes