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| Mutant Information |
|---|
| Mutant Name | FN-38 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-38 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22453599 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 37661778 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 2257024 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 13472844 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 13628642 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26148506 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5259037 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7912990 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 28945756 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 11701614 | A-G | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr5 | 22258699 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 24100867 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 25120968 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr6 | 10576698 | C-T | Homo | INTRON | |
| SBS | Chr6 | 20422481 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12047090 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 19633142 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28665772 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 29044200 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 14245785 | C-A | Hetero | INTRON | |
| SBS | Chr9 | 21439563 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3512790 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 4144926 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15389556 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4087971 | A-G | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 3009239 | 3009240 | 1 | OsKitaake01g038100 |
| Deletion | Chr6 | 8462142 | 8462231 | 89 | |
| Deletion | Chr4 | 10248875 | 10248876 | 1 | |
| Deletion | Chr2 | 13664332 | 13664337 | 5 | |
| Deletion | Chr10 | 17656286 | 17656287 | 1 | |
| Deletion | Chr6 | 21326166 | 21326167 | 1 | OsKitaake06g189100 |
| Deletion | Chr11 | 26958780 | 26959206 | 426 | |
| Deletion | Chr7 | 26980654 | 26980655 | 1 | OsKitaake07g251700 |
| Deletion | Chr5 | 29834447 | 29834449 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 2497159 | 2497166 | 6 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 10680585 | 11484328 | OsKitaake11g105300 |
| Inversion | Chr11 | 10680588 | 11484572 | OsKitaake11g105300 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 1265334 | Chr4 | 36181755 | 2 |
| Translocation | Chr5 | 1265335 | Chr4 | 36181773 | 2 |