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Mutant Information

Mutant Name	FN-380 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-380 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5478929 G-C Hetero INTERGENIC
SBS Chr1 8508038 G-A Homo INTERGENIC
SBS Chr1 24601788 A-G Hetero INTRON
SBS Chr1 30003798 C-T Hetero INTERGENIC
SBS Chr1 32334457 T-A Hetero INTRON
SBS Chr1 32754423 G-C Hetero INTRON
SBS Chr1 42722526 C-G Hetero INTERGENIC
SBS Chr2 8587664 C-T Homo INTERGENIC
SBS Chr2 32169721 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g328900
SBS Chr4 1901686 C-T Hetero INTERGENIC
SBS Chr4 3597692 G-C Homo INTERGENIC
SBS Chr4 32071029 G-A Homo INTERGENIC
SBS Chr7 11241909 A-T Hetero INTERGENIC
SBS Chr7 14010689 T-C Hetero INTERGENIC
SBS Chr7 29220124 A-G Homo INTERGENIC
SBS Chr7 29468324 A-T Homo NON_SYNONYMOUS_CODING OsKitaake07g283700
SBS Chr8 15613373 G-A Homo INTERGENIC
SBS Chr8 22299753 C-A Hetero INTERGENIC
SBS Chr9 8167667 G-A Hetero INTERGENIC
SBS Chr9 18879285 A-C Homo INTERGENIC
SBS Chr10 16527681 T-A Hetero INTERGENIC
SBS Chr10 17782090 T-C Hetero INTERGENIC
SBS Chr11 682675 G-A Homo UTR_3_PRIME
SBS Chr11 12995694 T-A Hetero INTERGENIC
SBS Chr12 7823393 T-A Hetero INTERGENIC
SBS Chr12 10252340 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 10785 10787 2
Deletion Chr11 274259 274264 5
Deletion Chr6 1587555 1587557 2
Deletion Chr8 5072790 5073158 368
Deletion Chr1 7991356 7991357 1
Deletion Chr1 8456384 8456387 3
Deletion Chr11 8854570 8854661 91
Deletion Chr6 8965117 8965124 7
Deletion Chr5 12901333 12901343 10
Deletion Chr1 14315869 14315877 8 OsKitaake01g163300
Deletion Chr3 21681549 21681550 1
Deletion Chr6 21724644 21724645 1 OsKitaake06g191500
Deletion Chr11 22134332 22134335 3
Deletion Chr6 23674398 23674403 5
Deletion Chr3 23989964 23989966 2
Deletion Chr6 24996336 24996385 49
Deletion Chr12 25493054 25493055 1
Deletion Chr3 32842679 32842681 2
Deletion Chr1 38194160 38194161 1
Deletion Chr1 39650000 39650002 2 OsKitaake01g428000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4440892 4440895 2
Insertion Chr6 16647037 16647040 2
Insertion Chr3 697741 697745 3
Insertion Chr4 31965684 31965686 1
Insertion Chr5 15424490 15424492 1 OsKitaake05g118300
Insertion Chr9 2667591 2667595 3

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 6783727 7164025 OsKitaake02g092500
Inversion Chr2 6783728 7164026 OsKitaake02g092500
Inversion Chr4 13808262 13920215
Inversion Chr4 13808265 13920221
Inversion Chr4 17956816 18142628
Inversion Chr4 17958902 18142635

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9837972 Chr8 13189690 OsKitaake08g110100
Translocation Chr11 9838422 Chr8 13189690 OsKitaake08g110100
Translocation Chr3 18298871 Chr1 803431 OsKitaake01g008600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5478929	G-C	Hetero	INTERGENIC
SBS	Chr1	8508038	G-A	Homo	INTERGENIC
SBS	Chr1	24601788	A-G	Hetero	INTRON
SBS	Chr1	30003798	C-T	Hetero	INTERGENIC
SBS	Chr1	32334457	T-A	Hetero	INTRON
SBS	Chr1	32754423	G-C	Hetero	INTRON
SBS	Chr1	42722526	C-G	Hetero	INTERGENIC
SBS	Chr2	8587664	C-T	Homo	INTERGENIC
SBS	Chr2	32169721	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g328900
SBS	Chr4	1901686	C-T	Hetero	INTERGENIC
SBS	Chr4	3597692	G-C	Homo	INTERGENIC
SBS	Chr4	32071029	G-A	Homo	INTERGENIC
SBS	Chr7	11241909	A-T	Hetero	INTERGENIC
SBS	Chr7	14010689	T-C	Hetero	INTERGENIC
SBS	Chr7	29220124	A-G	Homo	INTERGENIC
SBS	Chr7	29468324	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g283700
SBS	Chr8	15613373	G-A	Homo	INTERGENIC
SBS	Chr8	22299753	C-A	Hetero	INTERGENIC
SBS	Chr9	8167667	G-A	Hetero	INTERGENIC
SBS	Chr9	18879285	A-C	Homo	INTERGENIC
SBS	Chr10	16527681	T-A	Hetero	INTERGENIC
SBS	Chr10	17782090	T-C	Hetero	INTERGENIC
SBS	Chr11	682675	G-A	Homo	UTR_3_PRIME
SBS	Chr11	12995694	T-A	Hetero	INTERGENIC
SBS	Chr12	7823393	T-A	Hetero	INTERGENIC
SBS	Chr12	10252340	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	10785	10787	2
Deletion	Chr11	274259	274264	5
Deletion	Chr6	1587555	1587557	2
Deletion	Chr8	5072790	5073158	368
Deletion	Chr1	7991356	7991357	1
Deletion	Chr1	8456384	8456387	3
Deletion	Chr11	8854570	8854661	91
Deletion	Chr6	8965117	8965124	7
Deletion	Chr5	12901333	12901343	10
Deletion	Chr1	14315869	14315877	8	OsKitaake01g163300
Deletion	Chr3	21681549	21681550	1
Deletion	Chr6	21724644	21724645	1	OsKitaake06g191500
Deletion	Chr11	22134332	22134335	3
Deletion	Chr6	23674398	23674403	5
Deletion	Chr3	23989964	23989966	2
Deletion	Chr6	24996336	24996385	49
Deletion	Chr12	25493054	25493055	1
Deletion	Chr3	32842679	32842681	2
Deletion	Chr1	38194160	38194161	1
Deletion	Chr1	39650000	39650002	2	OsKitaake01g428000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6783727	7164025	OsKitaake02g092500
Inversion	Chr2	6783728	7164026	OsKitaake02g092500
Inversion	Chr4	13808262	13920215
Inversion	Chr4	13808265	13920221
Inversion	Chr4	17956816	18142628
Inversion	Chr4	17958902	18142635

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes