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Mutant Information

Mutant Name	FN-381 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-381 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11944747 T-C Hetero INTERGENIC
SBS Chr1 29817936 A-G Hetero INTERGENIC
SBS Chr1 43385049 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g480100
SBS Chr2 2161754 T-A Hetero INTRON
SBS Chr3 14965391 G-T Hetero INTRON
SBS Chr3 26389270 G-C Hetero INTERGENIC
SBS Chr4 19939161 T-G Homo INTERGENIC
SBS Chr4 24781779 A-T Hetero UTR_3_PRIME
SBS Chr4 24781780 G-T Hetero UTR_3_PRIME
SBS Chr4 27368944 T-A Hetero UTR_3_PRIME
SBS Chr4 27599975 T-C Hetero INTERGENIC
SBS Chr4 29455327 T-A Hetero INTERGENIC
SBS Chr4 29455328 T-A Hetero INTERGENIC
SBS Chr5 15850993 C-T Hetero INTERGENIC
SBS Chr5 30166877 T-A Homo INTERGENIC
SBS Chr7 12254799 C-T Homo INTERGENIC
SBS Chr7 13121009 A-T Homo UTR_3_PRIME
SBS Chr7 25862415 C-A Homo INTERGENIC
SBS Chr9 15171120 T-C Homo INTERGENIC
SBS Chr9 16028191 A-G Homo UTR_5_PRIME
SBS Chr10 6444213 C-T Hetero INTERGENIC
SBS Chr10 10563404 A-G Homo INTERGENIC
SBS Chr10 12403650 T-A Homo INTRON
SBS Chr10 19318465 A-T Homo INTERGENIC
SBS Chr11 3650832 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g050600
SBS Chr11 5005700 G-A Homo INTERGENIC
SBS Chr11 6021060 T-A Homo INTRON
SBS Chr12 7188537 T-A Hetero INTRON
SBS Chr12 7188538 T-A Hetero INTRON

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2925046 2925048 2
Deletion Chr12 3923880 3924006 126
Deletion Chr4 4436775 4436780 5
Deletion Chr4 6346771 6346777 6 OsKitaake04g031900
Deletion Chr9 7126186 7126188 2
Deletion Chr12 7203001 7243000 39999 2
Deletion Chr7 8259425 8259469 44
Deletion Chr6 12881206 12881221 15
Deletion Chr10 15165815 15165824 9
Deletion Chr3 16183965 16183967 2
Deletion Chr8 19368470 19368472 2
Deletion Chr2 19462204 19462314 110
Deletion Chr4 22296001 22470000 173999 33
Deletion Chr1 23279091 23279099 8
Deletion Chr4 23779239 23779241 2 OsKitaake04g150400
Deletion Chr4 25893293 25893294 1
Deletion Chr3 26952127 26952293 166
Deletion Chr4 27109001 27144000 34999 4
Deletion Chr4 29412001 29425000 12999 6
Deletion Chr3 29733296 29733298 2
Deletion Chr3 30767233 30767234 1
Deletion Chr3 32272675 32272678 3
Deletion Chr2 34135725 34136122 397 OsKitaake02g354400
Deletion Chr1 35763581 35763583 2 OsKitaake01g378700
Deletion Chr1 41148124 41148126 2
Deletion Chr1 44136585 44136586 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 1396065 1396067 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7197727 Chr3 10343757
Translocation Chr12 7203426 Chr3 10343824 OsKitaake12g080300
Translocation Chr9 17078382 Chr4 27110476 OsKitaake04g197100
Translocation Chr9 17085993 Chr4 27143510 OsKitaake09g127100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11944747	T-C	Hetero	INTERGENIC
SBS	Chr1	29817936	A-G	Hetero	INTERGENIC
SBS	Chr1	43385049	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g480100
SBS	Chr2	2161754	T-A	Hetero	INTRON
SBS	Chr3	14965391	G-T	Hetero	INTRON
SBS	Chr3	26389270	G-C	Hetero	INTERGENIC
SBS	Chr4	19939161	T-G	Homo	INTERGENIC
SBS	Chr4	24781779	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	24781780	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	27368944	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	27599975	T-C	Hetero	INTERGENIC
SBS	Chr4	29455327	T-A	Hetero	INTERGENIC
SBS	Chr4	29455328	T-A	Hetero	INTERGENIC
SBS	Chr5	15850993	C-T	Hetero	INTERGENIC
SBS	Chr5	30166877	T-A	Homo	INTERGENIC
SBS	Chr7	12254799	C-T	Homo	INTERGENIC
SBS	Chr7	13121009	A-T	Homo	UTR_3_PRIME
SBS	Chr7	25862415	C-A	Homo	INTERGENIC
SBS	Chr9	15171120	T-C	Homo	INTERGENIC
SBS	Chr9	16028191	A-G	Homo	UTR_5_PRIME
SBS	Chr10	6444213	C-T	Hetero	INTERGENIC
SBS	Chr10	10563404	A-G	Homo	INTERGENIC
SBS	Chr10	12403650	T-A	Homo	INTRON
SBS	Chr10	19318465	A-T	Homo	INTERGENIC
SBS	Chr11	3650832	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g050600
SBS	Chr11	5005700	G-A	Homo	INTERGENIC
SBS	Chr11	6021060	T-A	Homo	INTRON
SBS	Chr12	7188537	T-A	Hetero	INTRON
SBS	Chr12	7188538	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2925046	2925048	2
Deletion	Chr12	3923880	3924006	126
Deletion	Chr4	4436775	4436780	5
Deletion	Chr4	6346771	6346777	6	OsKitaake04g031900
Deletion	Chr9	7126186	7126188	2
Deletion	Chr12	7203001	7243000	39999	2
Deletion	Chr7	8259425	8259469	44
Deletion	Chr6	12881206	12881221	15
Deletion	Chr10	15165815	15165824	9
Deletion	Chr3	16183965	16183967	2
Deletion	Chr8	19368470	19368472	2
Deletion	Chr2	19462204	19462314	110
Deletion	Chr4	22296001	22470000	173999	33
Deletion	Chr1	23279091	23279099	8
Deletion	Chr4	23779239	23779241	2	OsKitaake04g150400
Deletion	Chr4	25893293	25893294	1
Deletion	Chr3	26952127	26952293	166
Deletion	Chr4	27109001	27144000	34999	4
Deletion	Chr4	29412001	29425000	12999	6
Deletion	Chr3	29733296	29733298	2
Deletion	Chr3	30767233	30767234	1
Deletion	Chr3	32272675	32272678	3
Deletion	Chr2	34135725	34136122	397	OsKitaake02g354400
Deletion	Chr1	35763581	35763583	2	OsKitaake01g378700
Deletion	Chr1	41148124	41148126	2
Deletion	Chr1	44136585	44136586	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7197727	Chr3	10343757
Translocation	Chr12	7203426	Chr3	10343824	OsKitaake12g080300
Translocation	Chr9	17078382	Chr4	27110476	OsKitaake04g197100
Translocation	Chr9	17085993	Chr4	27143510	OsKitaake09g127100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes