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| Mutant Information |
|---|
| Mutant Name | FN-382 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-382 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13734091 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g159400 |
| SBS | Chr1 | 31864398 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 36274528 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 3599494 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 8946181 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 28721414 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 8052636 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 4493280 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15340607 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 15340618 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 15340619 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21736300 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 19311652 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 8835559 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27692365 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 4625910 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 4631333 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 22851169 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3250107 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4734972 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 6805367 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 17390420 | G-A | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2733387 | 2733390 | 3 | |
| Deletion | Chr5 | 3762266 | 3762267 | 1 | OsKitaake05g045100 |
| Deletion | Chr5 | 4587021 | 4587022 | 1 | OsKitaake05g053100 |
| Deletion | Chr12 | 6311507 | 6311509 | 2 | |
| Deletion | Chr5 | 9155544 | 9155640 | 96 | |
| Deletion | Chr4 | 9480430 | 9480602 | 172 | |
| Deletion | Chr11 | 16991160 | 16991162 | 2 | |
| Deletion | Chr11 | 25510729 | 25510732 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 10699739 | 10699742 | 2 | |
| Insertion | Chr3 | 12557569 | 12557572 | 2 | |
| Insertion | Chr4 | 11367026 | 11367028 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 26904899 | 27648104 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 2796019 | Chr3 | 26886314 | |
| Translocation | Chr10 | 4878212 | Chr2 | 34005389 | |
| Translocation | Chr10 | 4888978 | Chr2 | 34005399 |