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Mutant Information

Mutant Name	FN-384 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-384 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 13090756 C-A Hetero INTERGENIC
SBS Chr2 19114450 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g186600
SBS Chr2 33511782 G-A Hetero INTERGENIC
SBS Chr3 1320481 A-T Hetero INTERGENIC
SBS Chr3 1320482 G-T Hetero INTERGENIC
SBS Chr3 1320483 G-T Hetero INTERGENIC
SBS Chr3 16752567 C-T Homo INTERGENIC
SBS Chr3 24556393 G-A Hetero INTERGENIC
SBS Chr4 6486897 T-A Hetero INTERGENIC
SBS Chr4 12850751 A-C Hetero INTRON
SBS Chr5 13843778 G-A Hetero INTERGENIC
SBS Chr5 24810481 G-A Hetero INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr6 1375339 A-T Homo INTERGENIC
SBS Chr6 6775954 C-T Homo INTERGENIC
SBS Chr7 20271660 C-T Hetero INTERGENIC
SBS Chr7 26030731 T-A Homo INTERGENIC
SBS Chr8 8578737 C-T Hetero INTERGENIC
SBS Chr8 9196638 A-T Hetero INTERGENIC
SBS Chr8 18812032 G-A Hetero INTERGENIC
SBS Chr9 2097186 A-G Hetero INTERGENIC
SBS Chr10 13747145 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g083800
SBS Chr10 18870699 C-T Hetero INTERGENIC
SBS Chr11 2916211 G-T Hetero UTR_5_PRIME
SBS Chr12 3444696 T-A Hetero INTERGENIC
SBS Chr12 26037988 A-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 11283 11284 1
Deletion Chr1 1730760 1730766 6
Deletion Chr11 3971987 3971989 2
Deletion Chr4 14135173 14135175 2
Deletion Chr10 18686981 18686983 2
Deletion Chr6 24702948 24702949 1
Deletion Chr11 24769842 24769844 2
Deletion Chr12 25899502 25899504 2
Deletion Chr3 33770699 33770790 91

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13125787 13125790 2
Insertion Chr4 29847631 29847634 2
Insertion Chr4 22525662 22525665 2
Insertion Chr7 22848895 22848898 2
Insertion Chr8 650878 650882 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	13090756	C-A	Hetero	INTERGENIC
SBS	Chr2	19114450	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g186600
SBS	Chr2	33511782	G-A	Hetero	INTERGENIC
SBS	Chr3	1320481	A-T	Hetero	INTERGENIC
SBS	Chr3	1320482	G-T	Hetero	INTERGENIC
SBS	Chr3	1320483	G-T	Hetero	INTERGENIC
SBS	Chr3	16752567	C-T	Homo	INTERGENIC
SBS	Chr3	24556393	G-A	Hetero	INTERGENIC
SBS	Chr4	6486897	T-A	Hetero	INTERGENIC
SBS	Chr4	12850751	A-C	Hetero	INTRON
SBS	Chr5	13843778	G-A	Hetero	INTERGENIC
SBS	Chr5	24810481	G-A	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	1375339	A-T	Homo	INTERGENIC
SBS	Chr6	6775954	C-T	Homo	INTERGENIC
SBS	Chr7	20271660	C-T	Hetero	INTERGENIC
SBS	Chr7	26030731	T-A	Homo	INTERGENIC
SBS	Chr8	8578737	C-T	Hetero	INTERGENIC
SBS	Chr8	9196638	A-T	Hetero	INTERGENIC
SBS	Chr8	18812032	G-A	Hetero	INTERGENIC
SBS	Chr9	2097186	A-G	Hetero	INTERGENIC
SBS	Chr10	13747145	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g083800
SBS	Chr10	18870699	C-T	Hetero	INTERGENIC
SBS	Chr11	2916211	G-T	Hetero	UTR_5_PRIME
SBS	Chr12	3444696	T-A	Hetero	INTERGENIC
SBS	Chr12	26037988	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	11283	11284	1
Deletion	Chr1	1730760	1730766	6
Deletion	Chr11	3971987	3971989	2
Deletion	Chr4	14135173	14135175	2
Deletion	Chr10	18686981	18686983	2
Deletion	Chr6	24702948	24702949	1
Deletion	Chr11	24769842	24769844	2
Deletion	Chr12	25899502	25899504	2
Deletion	Chr3	33770699	33770790	91

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes