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| Mutant Information |
|---|
| Mutant Name | FN-386 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-386 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11508107 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 28531454 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 21950825 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 20179677 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25993872 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 12078354 | T-A | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 27779204 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34031453 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 36578349 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11586164 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16040624 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 22699058 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 6837056 | C-T | Homo | INTRON | |
| SBS | Chr7 | 6935145 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 14383567 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 8851245 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 15149558 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 17018701 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20579503 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g174200 |
| SBS | Chr10 | 19672766 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 2781258 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 10988746 | G-A | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1403844 | 1403855 | 11 | OsKitaake02g021600 |
| Deletion | Chr11 | 2752625 | 2752839 | 214 | |
| Deletion | Chr1 | 3634520 | 3634522 | 2 | |
| Deletion | Chr6 | 5747813 | 5747815 | 2 | |
| Deletion | Chr8 | 8197371 | 8197373 | 2 | |
| Deletion | Chr7 | 8259425 | 8259469 | 44 | |
| Deletion | Chr7 | 8659994 | 8659996 | 2 | |
| Deletion | Chr11 | 12325689 | 12325690 | 1 | |
| Deletion | Chr4 | 12971762 | 12971763 | 1 | OsKitaake04g061600 |
| Deletion | Chr9 | 15202445 | 15202447 | 2 | |
| Deletion | Chr5 | 17582587 | 17582588 | 1 | |
| Deletion | Chr11 | 19540458 | 19540462 | 4 | |
| Deletion | Chr3 | 20771001 | 20868000 | 96999 | 5 |
| Deletion | Chr5 | 23268781 | 23268783 | 2 | |
| Deletion | Chr2 | 32776079 | 32776080 | 1 | |
| Deletion | Chr4 | 35844862 | 35844863 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 31983620 | 31983623 | 2 | |
| Insertion | Chr6 | 89620 | 89623 | 2 | |
| Insertion | Chr10 | 2388527 | 2388530 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 10815300 | 10864598 | |
| Inversion | Chr10 | 10815308 | 10864659 | |
| Inversion | Chr3 | 20598593 | 20772449 |