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Mutant Information

Mutant Name	FN-387 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-387 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 36756335 A-G Hetero INTERGENIC
SBS Chr2 10280343 T-A Hetero INTERGENIC
SBS Chr2 11476635 C-T Hetero INTERGENIC
SBS Chr2 36557512 T-A Homo INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 2072161 G-T Homo INTERGENIC
SBS Chr3 15005054 T-C Hetero INTRON
SBS Chr3 24792314 C-T Hetero INTERGENIC
SBS Chr3 36505288 T-A Homo INTRON
SBS Chr4 1606536 G-A Hetero INTERGENIC
SBS Chr4 9587668 G-T Hetero INTERGENIC
SBS Chr4 15953074 A-C Hetero INTERGENIC
SBS Chr4 19651389 G-A Hetero INTERGENIC
SBS Chr4 20051419 C-T Hetero INTRON
SBS Chr4 29361937 A-G Hetero UTR_3_PRIME
SBS Chr4 32255790 C-A Homo NON_SYNONYMOUS_CODING OsKitaake04g256900
SBS Chr5 9385507 T-C Homo INTERGENIC
SBS Chr5 16560574 G-A Homo INTERGENIC
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr5 21840015 T-A Homo INTRON
SBS Chr6 19836266 G-A Homo INTERGENIC
SBS Chr6 25377354 G-A Hetero INTERGENIC
SBS Chr7 1409933 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g020000
SBS Chr7 2185559 G-A Hetero INTRON
SBS Chr7 4774019 G-A Hetero INTERGENIC
SBS Chr7 6338391 A-C Homo INTERGENIC
SBS Chr8 16629754 T-A Hetero INTRON
SBS Chr8 21869790 G-T Hetero INTERGENIC
SBS Chr8 26991542 T-C Hetero INTERGENIC
SBS Chr9 16640133 G-A Hetero UTR_3_PRIME
SBS Chr10 5330067 G-A Hetero INTERGENIC
SBS Chr10 21321923 C-T Homo INTERGENIC
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr12 11281705 G-A Hetero INTERGENIC
SBS Chr12 22271476 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g175200

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 457855 457856 1 OsKitaake09g003700
Deletion Chr6 3758423 3758428 5
Deletion Chr10 5840001 5863000 22999
Deletion Chr7 8683538 8683539 1
Deletion Chr10 9126861 9126865 4
Deletion Chr9 9611865 9611866 1 OsKitaake09g058600
Deletion Chr10 10553576 10553583 7
Deletion Chr8 12242001 12309000 66999 2
Deletion Chr8 12313001 12382000 68999 3
Deletion Chr5 13002558 13002559 1
Deletion Chr12 15184513 15184516 3
Deletion Chr11 15911135 15911146 11
Deletion Chr1 22407447 22407450 3
Deletion Chr4 22491302 22491308 6
Deletion Chr4 35763898 35763903 5
Deletion Chr1 35787001 35813000 25999 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23683051 23683055 3
Insertion Chr6 9800970 9800974 3
Insertion Chr12 22995057 22995060 2
Insertion Chr8 5255130 5255133 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 14905698 15068132
Inversion Chr1 14905704 15068138

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36756335	A-G	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Hetero	INTERGENIC
SBS	Chr2	36557512	T-A	Homo	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	2072161	G-T	Homo	INTERGENIC
SBS	Chr3	15005054	T-C	Hetero	INTRON
SBS	Chr3	24792314	C-T	Hetero	INTERGENIC
SBS	Chr3	36505288	T-A	Homo	INTRON
SBS	Chr4	1606536	G-A	Hetero	INTERGENIC
SBS	Chr4	9587668	G-T	Hetero	INTERGENIC
SBS	Chr4	15953074	A-C	Hetero	INTERGENIC
SBS	Chr4	19651389	G-A	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Hetero	INTRON
SBS	Chr4	29361937	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	32255790	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g256900
SBS	Chr5	9385507	T-C	Homo	INTERGENIC
SBS	Chr5	16560574	G-A	Homo	INTERGENIC
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr5	21840015	T-A	Homo	INTRON
SBS	Chr6	19836266	G-A	Homo	INTERGENIC
SBS	Chr6	25377354	G-A	Hetero	INTERGENIC
SBS	Chr7	1409933	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g020000
SBS	Chr7	2185559	G-A	Hetero	INTRON
SBS	Chr7	4774019	G-A	Hetero	INTERGENIC
SBS	Chr7	6338391	A-C	Homo	INTERGENIC
SBS	Chr8	16629754	T-A	Hetero	INTRON
SBS	Chr8	21869790	G-T	Hetero	INTERGENIC
SBS	Chr8	26991542	T-C	Hetero	INTERGENIC
SBS	Chr9	16640133	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	5330067	G-A	Hetero	INTERGENIC
SBS	Chr10	21321923	C-T	Homo	INTERGENIC
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr12	11281705	G-A	Hetero	INTERGENIC
SBS	Chr12	22271476	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g175200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	457855	457856	1	OsKitaake09g003700
Deletion	Chr6	3758423	3758428	5
Deletion	Chr10	5840001	5863000	22999
Deletion	Chr7	8683538	8683539	1
Deletion	Chr10	9126861	9126865	4
Deletion	Chr9	9611865	9611866	1	OsKitaake09g058600
Deletion	Chr10	10553576	10553583	7
Deletion	Chr8	12242001	12309000	66999	2
Deletion	Chr8	12313001	12382000	68999	3
Deletion	Chr5	13002558	13002559	1
Deletion	Chr12	15184513	15184516	3
Deletion	Chr11	15911135	15911146	11
Deletion	Chr1	22407447	22407450	3
Deletion	Chr4	22491302	22491308	6
Deletion	Chr4	35763898	35763903	5
Deletion	Chr1	35787001	35813000	25999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14905698	15068132
Inversion	Chr1	14905704	15068138

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes