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Mutant Information

Mutant Name	FN-388 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-388 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 16

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24999718 G-A Homo INTRON
SBS Chr2 9775730 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g119300
SBS Chr2 10138914 C-G Homo INTERGENIC
SBS Chr3 8754768 G-A Hetero INTERGENIC
SBS Chr3 19254451 G-A Homo INTERGENIC
SBS Chr4 1789367 A-G Hetero INTERGENIC
SBS Chr4 14840734 G-C Hetero INTERGENIC
SBS Chr4 25397598 G-A Hetero INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr7 907091 C-T Homo INTERGENIC
SBS Chr7 6065458 C-T Hetero INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr7 26348372 G-T Homo INTERGENIC
SBS Chr7 26808154 T-C Homo UTR_3_PRIME
SBS Chr11 1273667 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g015500
SBS Chr11 1287196 A-G Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1454778 1454780 2
Deletion Chr3 4440892 4440894 2
Deletion Chr8 5255130 5255132 2
Deletion Chr5 6785620 6785622 2 OsKitaake05g068400
Deletion Chr8 10020920 10020922 2
Deletion Chr4 11140805 11140810 5
Deletion Chr1 12102001 12224000 121999 6
Deletion Chr6 12300411 12300413 2
Deletion Chr9 12991536 12991537 1
Deletion Chr8 13385200 13385201 1
Deletion Chr11 14205237 14205245 8
Deletion Chr3 14534516 14534524 8
Deletion Chr11 15045971 15045973 2
Deletion Chr3 19304245 19304251 6
Deletion Chr10 19841335 19841336 1
Deletion Chr6 21374833 21374835 2
Deletion Chr7 21820916 21820918 2
Deletion Chr6 22918555 22918556 1
Deletion Chr2 25009685 25009767 82

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 27891597 27891600 2
Insertion Chr5 21767326 21767332 5
Insertion Chr10 21368120 21368123 2
Insertion Chr11 9785051 9785055 3

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 28593 77417 2
Inversion Chr12 28597 77422 2
Inversion Chr6 8726787 8884646
Inversion Chr6 8726800 8889838
Inversion Chr11 10336099 10341235
Inversion Chr11 10336102 10341230
Inversion Chr4 18847454 19022969 OsKitaake04g095700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1677513 Chr6 8726924
Translocation Chr11 1677646 Chr6 8889978 OsKitaake11g022300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24999718	G-A	Homo	INTRON
SBS	Chr2	9775730	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g119300
SBS	Chr2	10138914	C-G	Homo	INTERGENIC
SBS	Chr3	8754768	G-A	Hetero	INTERGENIC
SBS	Chr3	19254451	G-A	Homo	INTERGENIC
SBS	Chr4	1789367	A-G	Hetero	INTERGENIC
SBS	Chr4	14840734	G-C	Hetero	INTERGENIC
SBS	Chr4	25397598	G-A	Hetero	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr7	907091	C-T	Homo	INTERGENIC
SBS	Chr7	6065458	C-T	Hetero	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr7	26348372	G-T	Homo	INTERGENIC
SBS	Chr7	26808154	T-C	Homo	UTR_3_PRIME
SBS	Chr11	1273667	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g015500
SBS	Chr11	1287196	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1454778	1454780	2
Deletion	Chr3	4440892	4440894	2
Deletion	Chr8	5255130	5255132	2
Deletion	Chr5	6785620	6785622	2	OsKitaake05g068400
Deletion	Chr8	10020920	10020922	2
Deletion	Chr4	11140805	11140810	5
Deletion	Chr1	12102001	12224000	121999	6
Deletion	Chr6	12300411	12300413	2
Deletion	Chr9	12991536	12991537	1
Deletion	Chr8	13385200	13385201	1
Deletion	Chr11	14205237	14205245	8
Deletion	Chr3	14534516	14534524	8
Deletion	Chr11	15045971	15045973	2
Deletion	Chr3	19304245	19304251	6
Deletion	Chr10	19841335	19841336	1
Deletion	Chr6	21374833	21374835	2
Deletion	Chr7	21820916	21820918	2
Deletion	Chr6	22918555	22918556	1
Deletion	Chr2	25009685	25009767	82

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	28593	77417	2
Inversion	Chr12	28597	77422	2
Inversion	Chr6	8726787	8884646
Inversion	Chr6	8726800	8889838
Inversion	Chr11	10336099	10341235
Inversion	Chr11	10336102	10341230
Inversion	Chr4	18847454	19022969	OsKitaake04g095700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes