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Mutant Information

Mutant Name	FN-390 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-390 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 556901 C-T Hetero INTRON
SBS Chr1 3337816 G-A Homo INTERGENIC
SBS Chr1 16203553 G-C Hetero INTERGENIC
SBS Chr1 16574450 C-G Hetero INTERGENIC
SBS Chr1 34634445 G-T Homo INTERGENIC
SBS Chr2 7777049 A-T Homo INTERGENIC
SBS Chr2 11682282 G-A Homo INTERGENIC
SBS Chr2 18541405 G-A Homo INTERGENIC
SBS Chr2 19098050 G-A Hetero INTERGENIC
SBS Chr2 27825502 G-A Homo INTERGENIC
SBS Chr2 30249153 C-T Homo INTERGENIC
SBS Chr2 31413731 G-C Hetero INTERGENIC
SBS Chr3 1638232 C-T Hetero INTERGENIC
SBS Chr3 26596169 A-G Hetero INTERGENIC
SBS Chr4 4543400 G-A Hetero INTERGENIC
SBS Chr4 31024428 A-G Hetero INTRON
SBS Chr5 7333756 A-G Homo INTERGENIC
SBS Chr5 17588075 C-G Homo INTERGENIC
SBS Chr5 17588077 G-T Homo INTERGENIC
SBS Chr6 3565645 A-T Hetero INTERGENIC
SBS Chr6 12567744 A-G Homo INTERGENIC
SBS Chr6 30578653 A-C Homo INTERGENIC
SBS Chr7 7765173 G-A Homo INTERGENIC
SBS Chr9 9019927 C-A Hetero SYNONYMOUS_CODING
SBS Chr10 4553420 C-T Hetero INTRON
SBS Chr10 13165178 A-G Homo INTERGENIC
SBS Chr10 14409641 C-T Hetero INTERGENIC
SBS Chr10 14424585 G-A Hetero INTRON
SBS Chr10 19782286 G-C Hetero INTRON
SBS Chr10 20893206 A-C Hetero INTRON
SBS Chr11 1289431 G-T Homo INTRON
SBS Chr11 3926617 G-T Homo INTERGENIC
SBS Chr12 23815933 C-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 178331 178333 2
Deletion Chr2 934889 934891 2
Deletion Chr1 1326133 1326141 8
Deletion Chr11 3240339 3240346 7 OsKitaake11g044900
Deletion Chr8 3270387 3270388 1
Deletion Chr9 4628911 4629084 173
Deletion Chr4 5039093 5039102 9
Deletion Chr4 5219479 5219491 12
Deletion Chr6 5698794 5698796 2
Deletion Chr9 5977258 5977264 6
Deletion Chr4 7791408 7791413 5
Deletion Chr10 10438096 10438098 2
Deletion Chr11 12641742 12641744 2
Deletion Chr7 16550152 16550160 8
Deletion Chr5 17477754 17477756 2
Deletion Chr1 17988658 17988843 185 OsKitaake01g182400
Deletion Chr6 19842066 19842067 1 OsKitaake06g178100
Deletion Chr4 21317077 21317091 14
Deletion Chr2 23432740 23432808 68
Deletion Chr10 23539072 23539074 2
Deletion Chr7 28346703 28346705 2
Deletion Chr8 28488154 28488164 10
Deletion Chr1 29416178 29416180 2
Deletion Chr11 29612001 29732000 119999 15

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 1458917 1458919 1 OsKitaake11g019200
Insertion Chr11 16448940 16448943 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 28834614 28992936 OsKitaake01g281600
Inversion Chr1 28834615 28992941 OsKitaake01g281600

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 19235637 Chr3 21036175
Translocation Chr12 19235647 Chr3 21036720
Translocation Chr10 23381276 Chr1 44178773 OsKitaake01g493300
Translocation Chr10 23381285 Chr1 44178765 OsKitaake01g493300
Translocation Chr12 26952589 Chr11 29611827 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	556901	C-T	Hetero	INTRON
SBS	Chr1	3337816	G-A	Homo	INTERGENIC
SBS	Chr1	16203553	G-C	Hetero	INTERGENIC
SBS	Chr1	16574450	C-G	Hetero	INTERGENIC
SBS	Chr1	34634445	G-T	Homo	INTERGENIC
SBS	Chr2	7777049	A-T	Homo	INTERGENIC
SBS	Chr2	11682282	G-A	Homo	INTERGENIC
SBS	Chr2	18541405	G-A	Homo	INTERGENIC
SBS	Chr2	19098050	G-A	Hetero	INTERGENIC
SBS	Chr2	27825502	G-A	Homo	INTERGENIC
SBS	Chr2	30249153	C-T	Homo	INTERGENIC
SBS	Chr2	31413731	G-C	Hetero	INTERGENIC
SBS	Chr3	1638232	C-T	Hetero	INTERGENIC
SBS	Chr3	26596169	A-G	Hetero	INTERGENIC
SBS	Chr4	4543400	G-A	Hetero	INTERGENIC
SBS	Chr4	31024428	A-G	Hetero	INTRON
SBS	Chr5	7333756	A-G	Homo	INTERGENIC
SBS	Chr5	17588075	C-G	Homo	INTERGENIC
SBS	Chr5	17588077	G-T	Homo	INTERGENIC
SBS	Chr6	3565645	A-T	Hetero	INTERGENIC
SBS	Chr6	12567744	A-G	Homo	INTERGENIC
SBS	Chr6	30578653	A-C	Homo	INTERGENIC
SBS	Chr7	7765173	G-A	Homo	INTERGENIC
SBS	Chr9	9019927	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	4553420	C-T	Hetero	INTRON
SBS	Chr10	13165178	A-G	Homo	INTERGENIC
SBS	Chr10	14409641	C-T	Hetero	INTERGENIC
SBS	Chr10	14424585	G-A	Hetero	INTRON
SBS	Chr10	19782286	G-C	Hetero	INTRON
SBS	Chr10	20893206	A-C	Hetero	INTRON
SBS	Chr11	1289431	G-T	Homo	INTRON
SBS	Chr11	3926617	G-T	Homo	INTERGENIC
SBS	Chr12	23815933	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	178331	178333	2
Deletion	Chr2	934889	934891	2
Deletion	Chr1	1326133	1326141	8
Deletion	Chr11	3240339	3240346	7	OsKitaake11g044900
Deletion	Chr8	3270387	3270388	1
Deletion	Chr9	4628911	4629084	173
Deletion	Chr4	5039093	5039102	9
Deletion	Chr4	5219479	5219491	12
Deletion	Chr6	5698794	5698796	2
Deletion	Chr9	5977258	5977264	6
Deletion	Chr4	7791408	7791413	5
Deletion	Chr10	10438096	10438098	2
Deletion	Chr11	12641742	12641744	2
Deletion	Chr7	16550152	16550160	8
Deletion	Chr5	17477754	17477756	2
Deletion	Chr1	17988658	17988843	185	OsKitaake01g182400
Deletion	Chr6	19842066	19842067	1	OsKitaake06g178100
Deletion	Chr4	21317077	21317091	14
Deletion	Chr2	23432740	23432808	68
Deletion	Chr10	23539072	23539074	2
Deletion	Chr7	28346703	28346705	2
Deletion	Chr8	28488154	28488164	10
Deletion	Chr1	29416178	29416180	2
Deletion	Chr11	29612001	29732000	119999	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	28834614	28992936	OsKitaake01g281600
Inversion	Chr1	28834615	28992941	OsKitaake01g281600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes