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Mutant Information

Mutant Name	FN-392 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-392 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4629221 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g062100
SBS Chr1 4629222 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 6646803 T-C Hetero INTRON
SBS Chr1 28422317 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g275300
SBS Chr1 35647392 C-T Hetero INTRON
SBS Chr1 37211322 A-T Hetero UTR_3_PRIME
SBS Chr2 20540667 C-T Homo INTERGENIC
SBS Chr2 29296535 T-C Hetero INTERGENIC
SBS Chr2 29649472 A-G Hetero INTERGENIC
SBS Chr3 8530353 A-G Homo INTERGENIC
SBS Chr3 25909678 T-C Hetero INTERGENIC
SBS Chr3 34457278 C-T Hetero INTERGENIC
SBS Chr3 35064609 A-G Hetero INTERGENIC
SBS Chr4 2031430 A-G Hetero INTERGENIC
SBS Chr4 4186082 G-A Hetero INTERGENIC
SBS Chr4 18124088 G-A Hetero INTERGENIC
SBS Chr4 19183531 T-C Hetero INTERGENIC
SBS Chr5 19632591 A-T Homo INTERGENIC
SBS Chr6 12952320 T-C Homo INTERGENIC
SBS Chr6 14409407 C-T Homo INTERGENIC
SBS Chr6 25213060 G-A Hetero INTERGENIC
SBS Chr7 16341751 C-T Homo UTR_3_PRIME
SBS Chr7 25402124 C-A Hetero INTERGENIC
SBS Chr8 17193731 G-A Hetero INTERGENIC
SBS Chr8 27542360 T-A Hetero INTERGENIC
SBS Chr8 27542361 T-A Hetero INTERGENIC
SBS Chr9 16773955 T-C Homo INTERGENIC
SBS Chr10 14033226 C-A Hetero INTRON
SBS Chr11 4918743 C-T Hetero INTERGENIC
SBS Chr11 24369984 A-T Hetero INTERGENIC
SBS Chr11 24373169 G-C Hetero INTERGENIC
SBS Chr11 24373754 G-T Hetero INTERGENIC
SBS Chr11 25179464 C-T Homo INTERGENIC
SBS Chr12 19521803 G-A Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 5201001 5271000 69999 5
Deletion Chr4 5657001 5714000 56999 2
Deletion Chr10 9983862 9983863 1
Deletion Chr8 10540806 10540807 1
Deletion Chr11 16944944 16944948 4
Deletion Chr4 20223191 20223193 2
Deletion Chr3 20230500 20230506 6
Deletion Chr8 21978713 21978720 7 OsKitaake08g166500
Deletion Chr5 22262454 22262768 314 OsKitaake05g182000
Deletion Chr5 23352728 23353144 416
Deletion Chr3 23822406 23822411 5
Deletion Chr3 24350605 24350616 11
Deletion Chr5 27041416 27041418 2
Deletion Chr6 27153015 27153033 18
Deletion Chr5 28259544 28259545 1
Deletion Chr2 29914151 29914152 1
Deletion Chr3 33317898 33317899 1 OsKitaake03g355900

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16070648 16070651 2
Insertion Chr7 11994714 11994716 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 608522 611776
Inversion Chr4 608523 611771
Inversion Chr9 11246027 11262425 OsKitaake09g070100
Inversion Chr1 41219579 41758478 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5817144 Chr1 41219575 OsKitaake01g450100
Translocation Chr8 13189593 Chr1 38616322 2
Translocation Chr8 13191274 Chr1 38616322 2
Translocation Chr11 23896888 Chr1 4621567 2
Translocation Chr11 23896900 Chr1 4621088 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4629221	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g062100
SBS	Chr1	4629222	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	6646803	T-C	Hetero	INTRON
SBS	Chr1	28422317	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g275300
SBS	Chr1	35647392	C-T	Hetero	INTRON
SBS	Chr1	37211322	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	20540667	C-T	Homo	INTERGENIC
SBS	Chr2	29296535	T-C	Hetero	INTERGENIC
SBS	Chr2	29649472	A-G	Hetero	INTERGENIC
SBS	Chr3	8530353	A-G	Homo	INTERGENIC
SBS	Chr3	25909678	T-C	Hetero	INTERGENIC
SBS	Chr3	34457278	C-T	Hetero	INTERGENIC
SBS	Chr3	35064609	A-G	Hetero	INTERGENIC
SBS	Chr4	2031430	A-G	Hetero	INTERGENIC
SBS	Chr4	4186082	G-A	Hetero	INTERGENIC
SBS	Chr4	18124088	G-A	Hetero	INTERGENIC
SBS	Chr4	19183531	T-C	Hetero	INTERGENIC
SBS	Chr5	19632591	A-T	Homo	INTERGENIC
SBS	Chr6	12952320	T-C	Homo	INTERGENIC
SBS	Chr6	14409407	C-T	Homo	INTERGENIC
SBS	Chr6	25213060	G-A	Hetero	INTERGENIC
SBS	Chr7	16341751	C-T	Homo	UTR_3_PRIME
SBS	Chr7	25402124	C-A	Hetero	INTERGENIC
SBS	Chr8	17193731	G-A	Hetero	INTERGENIC
SBS	Chr8	27542360	T-A	Hetero	INTERGENIC
SBS	Chr8	27542361	T-A	Hetero	INTERGENIC
SBS	Chr9	16773955	T-C	Homo	INTERGENIC
SBS	Chr10	14033226	C-A	Hetero	INTRON
SBS	Chr11	4918743	C-T	Hetero	INTERGENIC
SBS	Chr11	24369984	A-T	Hetero	INTERGENIC
SBS	Chr11	24373169	G-C	Hetero	INTERGENIC
SBS	Chr11	24373754	G-T	Hetero	INTERGENIC
SBS	Chr11	25179464	C-T	Homo	INTERGENIC
SBS	Chr12	19521803	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	5201001	5271000	69999	5
Deletion	Chr4	5657001	5714000	56999	2
Deletion	Chr10	9983862	9983863	1
Deletion	Chr8	10540806	10540807	1
Deletion	Chr11	16944944	16944948	4
Deletion	Chr4	20223191	20223193	2
Deletion	Chr3	20230500	20230506	6
Deletion	Chr8	21978713	21978720	7	OsKitaake08g166500
Deletion	Chr5	22262454	22262768	314	OsKitaake05g182000
Deletion	Chr5	23352728	23353144	416
Deletion	Chr3	23822406	23822411	5
Deletion	Chr3	24350605	24350616	11
Deletion	Chr5	27041416	27041418	2
Deletion	Chr6	27153015	27153033	18
Deletion	Chr5	28259544	28259545	1
Deletion	Chr2	29914151	29914152	1
Deletion	Chr3	33317898	33317899	1	OsKitaake03g355900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	608522	611776
Inversion	Chr4	608523	611771
Inversion	Chr9	11246027	11262425	OsKitaake09g070100
Inversion	Chr1	41219579	41758478	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes