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| Mutant Information |
|---|
| Mutant Name | FN-394 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-394 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 30031692 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 35931788 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 23673359 | T-A | Homo | INTRON | |
| SBS | Chr2 | 32216949 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 1600024 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9036578 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g124100 |
| SBS | Chr4 | 4077730 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4077762 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 4077768 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 11882725 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13249329 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 18326420 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18607082 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 20596090 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 36076585 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 6692405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14912305 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 17287692 | T-A | Homo | INTRON | |
| SBS | Chr6 | 20313745 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6420979 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 15931777 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 19513483 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1045920 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 11304507 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28951460 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g250100 |
| SBS | Chr9 | 1227429 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3100171 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 7161687 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 7843544 | G-A | Hetero | START_GAINED | |
| SBS | Chr11 | 10461475 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 15378761 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25026966 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 4414662 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 6740693 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 15477502 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20240607 | C-G | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 809653 | 809655 | 2 | |
| Deletion | Chr12 | 1401008 | 1401020 | 12 | |
| Deletion | Chr10 | 3480001 | 3507000 | 26999 | OsKitaake10g026400 |
| Deletion | Chr12 | 4393001 | 4415000 | 21999 | OsKitaake12g059800 |
| Deletion | Chr12 | 4837704 | 4837713 | 9 | |
| Deletion | Chr5 | 5504747 | 5504875 | 128 | |
| Deletion | Chr3 | 5769047 | 5769049 | 2 | |
| Deletion | Chr5 | 5893760 | 5893848 | 88 | |
| Deletion | Chr7 | 7343042 | 7343043 | 1 | |
| Deletion | Chr5 | 7939262 | 7939271 | 9 | |
| Deletion | Chr5 | 13281990 | 13281991 | 1 | |
| Deletion | Chr2 | 17805126 | 17805127 | 1 | |
| Deletion | Chr3 | 18414091 | 18414092 | 1 | |
| Deletion | Chr7 | 21976534 | 21976536 | 2 | |
| Deletion | Chr3 | 22744721 | 22744728 | 7 | |
| Deletion | Chr4 | 28288152 | 28288161 | 9 | |
| Deletion | Chr2 | 29431343 | 29431345 | 2 | |
| Deletion | Chr5 | 30133451 | 30133453 | 2 | |
| Deletion | Chr1 | 43965353 | 43965356 | 3 | OsKitaake01g490200 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 17925001 | 17925003 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 4122937 | 4393816 | OsKitaake12g056200 |
| Inversion | Chr12 | 4122940 | 4414234 | OsKitaake12g056200 |
| Inversion | Chr10 | 4385227 | 4558981 | OsKitaake10g033700 |