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| Mutant Information |
|---|
| Mutant Name | FN-396 [Download] |
| Generation | M2-SOS |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-396 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8324801 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33257386 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 40096983 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 14859660 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 12111593 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 12611798 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 16034536 | G-T | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr3 | 29224328 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g304000 |
| SBS | Chr4 | 3274303 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 32022570 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 15379135 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 20901466 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 10026750 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17716628 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16298597 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18055325 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 4679058 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 24025994 | T-A | Homo | INTRON | |
| SBS | Chr11 | 8472724 | G-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 4146503 | 4146504 | 1 | |
| Deletion | Chr1 | 8008001 | 8052000 | 43999 | 5 |
| Deletion | Chr10 | 8678028 | 8678029 | 1 | |
| Deletion | Chr9 | 8692793 | 8692794 | 1 | |
| Deletion | Chr12 | 11688132 | 11688297 | 165 | |
| Deletion | Chr5 | 15429295 | 15429297 | 2 | |
| Deletion | Chr12 | 19571595 | 19571599 | 4 | |
| Deletion | Chr8 | 26457323 | 26457324 | 1 | |
| Deletion | Chr8 | 27802258 | 27802259 | 1 | OsKitaake08g229400 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 4471064 | 4471067 | 2 | |
| Insertion | Chr7 | 2835353 | 2835356 | 2 | |
| Insertion | Chr11 | 1842027 | 1842030 | 2 | |
| Insertion | Chr2 | 20550501 | 20550503 | 1 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 6984617 | Chr3 | 23114542 | OsKitaake03g249600 |
| Translocation | Chr12 | 6984647 | Chr3 | 23035665 |