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| Mutant Information |
|---|
| Mutant Name | FN-397 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-397 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3899281 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 8063049 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 10340536 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 34733062 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 44013155 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 22261431 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 5871184 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15681781 | C-G | Homo | INTRON | |
| SBS | Chr3 | 20338243 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25153451 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 28936892 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 34547371 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 18493470 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 24255717 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 2802986 | T-A | Hetero | INTRON | |
| SBS | Chr5 | 2802988 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 3132806 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 9877576 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27674824 | A-C | Homo | INTRON | |
| SBS | Chr8 | 4818994 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12492035 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 2696576 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 17295269 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7051186 | A-T | Homo | INTRON | |
| SBS | Chr10 | 17204253 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 4240881 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g057000 |
| SBS | Chr11 | 15981758 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 16035951 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 11179631 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 16086775 | G-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 368678 | 368680 | 2 | OsKitaake07g003100 |
| Deletion | Chr8 | 1440863 | 1440865 | 2 | |
| Deletion | Chr2 | 10599916 | 10599917 | 1 | |
| Deletion | Chr1 | 16095113 | 16095119 | 6 | |
| Deletion | Chr3 | 16739732 | 16739904 | 172 | |
| Deletion | Chr1 | 20037267 | 20037270 | 3 | |
| Deletion | Chr7 | 20575326 | 20575328 | 2 | |
| Deletion | Chr4 | 20651275 | 20651277 | 2 | |
| Deletion | Chr8 | 21650753 | 21650754 | 1 | |
| Deletion | Chr6 | 22052144 | 22052146 | 2 | OsKitaake06g194200 |
| Deletion | Chr12 | 23126322 | 23126326 | 4 | |
| Deletion | Chr7 | 25138414 | 25138415 | 1 | |
| Deletion | Chr12 | 26718052 | 26718054 | 2 | |
| Deletion | Chr8 | 29027998 | 29028005 | 7 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 15771735 | 15771737 | 1 | |
| Insertion | Chr4 | 35368068 | 35368070 | 1 |