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| Mutant Information |
|---|
| Mutant Name | FN-398-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-398-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 17
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3473667 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29835835 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 30326355 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g298900 |
| SBS | Chr2 | 19016251 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31005733 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 28706594 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28868507 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 36301456 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 10813697 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 25432348 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 1372801 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 10115306 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 17700343 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g163500 |
| SBS | Chr7 | 9933303 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 24022897 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10618033 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11300863 | C-G | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 7489307 | 7489308 | 1 | |
| Deletion | Chr10 | 10203767 | 10203877 | 110 | |
| Deletion | Chr7 | 12417588 | 12417590 | 2 | OsKitaake07g111000 |
| Deletion | Chr10 | 16563009 | 16563017 | 8 | |
| Deletion | Chr5 | 22809292 | 22809294 | 2 | |
| Deletion | Chr1 | 42558001 | 42643000 | 84999 | 16 |